Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC42Q96M95 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC16.65■□□□□ 0.26
CCDC42Q96M95 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC16.65■□□□□ 0.26
CCDC42Q96M95 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC42Q96M95 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC42Q96M95 MTHFR-210ENST00000641407 2387 ntBASIC16.65■□□□□ 0.26
CCDC42Q96M95 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC42Q96M95 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC42Q96M95 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC42Q96M95 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC16.65■□□□□ 0.26
CCDC42Q96M95 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC16.65■□□□□ 0.26
CCDC42Q96M95 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC42Q96M95 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC42Q96M95 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CCDC42Q96M95 MEGF11-204ENST00000422354 5914 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
CCDC42Q96M95 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.26
CCDC42Q96M95 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.26
CCDC42Q96M95 SOGA3-201ENST00000465909 3756 ntTSL 5 BASIC16.64■□□□□ 0.26
CCDC42Q96M95 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC42Q96M95 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC42Q96M95 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC42Q96M95 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC42Q96M95 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC42Q96M95 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
CCDC42Q96M95 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC42Q96M95 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC42Q96M95 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC42Q96M95 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
CCDC42Q96M95 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC42Q96M95 RBPMS2P1-201ENST00000437762 623 ntBASIC16.64■□□□□ 0.25
CCDC42Q96M95 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC16.64■□□□□ 0.25
CCDC42Q96M95 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC16.64■□□□□ 0.25
CCDC42Q96M95 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC16.64■□□□□ 0.25
CCDC42Q96M95 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC42Q96M95 KRT18P58-201ENST00000527480 1120 ntBASIC16.64■□□□□ 0.25
CCDC42Q96M95 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
CCDC42Q96M95 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC16.64■□□□□ 0.25
CCDC42Q96M95 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC16.64■□□□□ 0.25
CCDC42Q96M95 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC16.64■□□□□ 0.25
CCDC42Q96M95 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC16.64■□□□□ 0.25
CCDC42Q96M95 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC42Q96M95 TK1-203ENST00000588734 1681 ntTSL 2 BASIC16.64■□□□□ 0.25
CCDC42Q96M95 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
CCDC42Q96M95 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
CCDC42Q96M95 CTNS-202ENST00000381870 2470 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC42Q96M95 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC16.64■□□□□ 0.25
CCDC42Q96M95 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC42Q96M95 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC16.64■□□□□ 0.25
CCDC42Q96M95 RSPRY1-202ENST00000537866 3586 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
CCDC42Q96M95 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC16.64■□□□□ 0.25
CCDC42Q96M95 TLL1-201ENST00000061240 6708 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC42Q96M95 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC42Q96M95 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC16.63■□□□□ 0.25
CCDC42Q96M95 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC16.63■□□□□ 0.25
CCDC42Q96M95 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC42Q96M95 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC42Q96M95 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC42Q96M95 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC42Q96M95 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC42Q96M95 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC42Q96M95 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC16.63■□□□□ 0.25
CCDC42Q96M95 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC42Q96M95 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
CCDC42Q96M95 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC42Q96M95 KIF7-201ENST00000394412 4551 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
CCDC42Q96M95 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC16.63■□□□□ 0.25
CCDC42Q96M95 ITSN1-210ENST00000399353 3913 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC42Q96M95 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC42Q96M95 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC16.63■□□□□ 0.25
CCDC42Q96M95 AC018529.2-202ENST00000611482 3087 ntBASIC16.63■□□□□ 0.25
CCDC42Q96M95 APBA1-201ENST00000265381 6534 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC42Q96M95 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC42Q96M95 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
CCDC42Q96M95 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
CCDC42Q96M95 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC42Q96M95 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC16.63■□□□□ 0.25
CCDC42Q96M95 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC16.63■□□□□ 0.25
CCDC42Q96M95 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC42Q96M95 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC16.63■□□□□ 0.25
CCDC42Q96M95 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC16.63■□□□□ 0.25
CCDC42Q96M95 PRR29-209ENST00000582540 967 ntTSL 2 BASIC16.63■□□□□ 0.25
CCDC42Q96M95 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC16.63■□□□□ 0.25
CCDC42Q96M95 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC16.63■□□□□ 0.25
CCDC42Q96M95 SERF2-217ENST00000630046 862 ntTSL 5 BASIC16.63■□□□□ 0.25
CCDC42Q96M95 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC16.63■□□□□ 0.25
CCDC42Q96M95 SYNPO2L-202ENST00000394810 4921 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC42Q96M95 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC42Q96M95 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC42Q96M95 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC42Q96M95 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
CCDC42Q96M95 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC42Q96M95 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC42Q96M95 SYT9-201ENST00000318881 3955 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CCDC42Q96M95 TNN-203ENST00000622870 3719 ntTSL 5 BASIC16.62■□□□□ 0.25
CCDC42Q96M95 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC16.62■□□□□ 0.25
CCDC42Q96M95 HTR7-203ENST00000371719 3033 ntAPPRIS ALT1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CCDC42Q96M95 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC16.62■□□□□ 0.25
CCDC42Q96M95 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CCDC42Q96M95 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
CCDC42Q96M95 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 157.2 ms