Protein–RNA interactions for Protein: Q8N205

SYNE4, Nesprin-4, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4Q8N205 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SYNE4Q8N205 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC18.92■□□□□ 0.62
SYNE4Q8N205 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SYNE4Q8N205 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
SYNE4Q8N205 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
SYNE4Q8N205 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
SYNE4Q8N205 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC18.92■□□□□ 0.62
SYNE4Q8N205 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SYNE4Q8N205 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SYNE4Q8N205 COX4I1-201ENST00000253452 708 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SYNE4Q8N205 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
SYNE4Q8N205 MIR769-201ENST00000390225 118 ntBASIC18.92■□□□□ 0.62
SYNE4Q8N205 IGHV3-21-201ENST00000390607 430 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
SYNE4Q8N205 IP6K2-205ENST00000413298 792 ntTSL 3 BASIC18.92■□□□□ 0.62
SYNE4Q8N205 DLGAP4-AS1-202ENST00000433238 593 ntTSL 3 BASIC18.92■□□□□ 0.62
SYNE4Q8N205 SPTLC1P5-201ENST00000450718 252 ntBASIC18.92■□□□□ 0.62
SYNE4Q8N205 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC18.92■□□□□ 0.62
SYNE4Q8N205 FTLP10-202ENST00000505798 471 ntBASIC18.92■□□□□ 0.62
SYNE4Q8N205 LEF1-AS1-204ENST00000508266 559 ntTSL 4 BASIC18.92■□□□□ 0.62
SYNE4Q8N205 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC18.92■□□□□ 0.62
SYNE4Q8N205 MIR5572-201ENST00000583188 137 ntBASIC18.92■□□□□ 0.62
SYNE4Q8N205 DIO1-215ENST00000610607 796 ntTSL 5 BASIC18.92■□□□□ 0.62
SYNE4Q8N205 CU633904.3-201ENST00000624042 1029 ntBASIC18.92■□□□□ 0.62
SYNE4Q8N205 LINC01668-201ENST00000635001 513 ntTSL 4 BASIC18.92■□□□□ 0.62
SYNE4Q8N205 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SYNE4Q8N205 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC18.92■□□□□ 0.62
SYNE4Q8N205 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SYNE4Q8N205 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC18.92■□□□□ 0.62
SYNE4Q8N205 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC18.92■□□□□ 0.62
SYNE4Q8N205 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC18.92■□□□□ 0.62
SYNE4Q8N205 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC18.92■□□□□ 0.62
SYNE4Q8N205 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
SYNE4Q8N205 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
SYNE4Q8N205 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SYNE4Q8N205 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SYNE4Q8N205 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC18.91■□□□□ 0.62
SYNE4Q8N205 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC18.91■□□□□ 0.62
SYNE4Q8N205 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
SYNE4Q8N205 GNAI2-207ENST00000451956 1486 ntTSL 2 BASIC18.91■□□□□ 0.62
SYNE4Q8N205 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC18.91■□□□□ 0.62
SYNE4Q8N205 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SYNE4Q8N205 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC18.91■□□□□ 0.62
SYNE4Q8N205 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SYNE4Q8N205 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC18.91■□□□□ 0.62
SYNE4Q8N205 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SYNE4Q8N205 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
SYNE4Q8N205 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC18.91■□□□□ 0.62
SYNE4Q8N205 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
SYNE4Q8N205 PSME1-201ENST00000206451 1006 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SYNE4Q8N205 HLA-DQB2-229ENST00000411527 1059 ntBASIC18.91■□□□□ 0.62
SYNE4Q8N205 AL354877.1-201ENST00000424412 413 ntBASIC18.91■□□□□ 0.62
SYNE4Q8N205 PTPA-217ENST00000434095 870 ntTSL 2 BASIC18.91■□□□□ 0.62
SYNE4Q8N205 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SYNE4Q8N205 LYRM4-206ENST00000468929 1168 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SYNE4Q8N205 SERPINA13P-202ENST00000478994 924 ntBASIC18.91■□□□□ 0.62
SYNE4Q8N205 TMEM198B-204ENST00000484016 896 ntBASIC18.91■□□□□ 0.62
SYNE4Q8N205 RN7SL720P-201ENST00000488178 304 ntBASIC18.91■□□□□ 0.62
SYNE4Q8N205 LY6G6C-202ENST00000495859 937 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SYNE4Q8N205 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC18.91■□□□□ 0.62
SYNE4Q8N205 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC18.91■□□□□ 0.62
SYNE4Q8N205 AC008537.4-201ENST00000595728 1103 ntTSL 5 BASIC18.91■□□□□ 0.62
SYNE4Q8N205 AL358472.3-201ENST00000608147 415 ntBASIC18.91■□□□□ 0.62
SYNE4Q8N205 AC138649.2-201ENST00000615886 705 ntBASIC18.91■□□□□ 0.62
SYNE4Q8N205 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC18.91■□□□□ 0.62
SYNE4Q8N205 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC18.91■□□□□ 0.62
SYNE4Q8N205 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC18.91■□□□□ 0.62
SYNE4Q8N205 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SYNE4Q8N205 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
SYNE4Q8N205 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC18.91■□□□□ 0.62
SYNE4Q8N205 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
SYNE4Q8N205 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SYNE4Q8N205 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC18.91■□□□□ 0.62
SYNE4Q8N205 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
SYNE4Q8N205 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC18.9■□□□□ 0.62
SYNE4Q8N205 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC18.9■□□□□ 0.62
SYNE4Q8N205 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC18.9■□□□□ 0.62
SYNE4Q8N205 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SYNE4Q8N205 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC18.9■□□□□ 0.62
SYNE4Q8N205 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SYNE4Q8N205 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SYNE4Q8N205 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC18.9■□□□□ 0.62
SYNE4Q8N205 SPAG11A-203ENST00000351436 534 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SYNE4Q8N205 SPAG11B-204ENST00000361111 534 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SYNE4Q8N205 TMEM254-204ENST00000372277 366 ntTSL 5 BASIC18.9■□□□□ 0.62
SYNE4Q8N205 DKFZp779M0652-201ENST00000378779 649 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SYNE4Q8N205 TMEM243-202ENST00000423734 601 ntTSL 2 BASIC18.9■□□□□ 0.62
SYNE4Q8N205 LINC01088-201ENST00000437737 973 ntTSL 5 BASIC18.9■□□□□ 0.62
SYNE4Q8N205 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
SYNE4Q8N205 AL133466.1-201ENST00000447582 150 ntBASIC18.9■□□□□ 0.62
SYNE4Q8N205 RNMTL1P1-201ENST00000454103 560 ntBASIC18.9■□□□□ 0.62
SYNE4Q8N205 AC011474.2-201ENST00000579268 543 ntTSL 3 BASIC18.9■□□□□ 0.62
SYNE4Q8N205 CROCCP3-204ENST00000590118 574 ntTSL 4 BASIC18.9■□□□□ 0.62
SYNE4Q8N205 AP001505.2-201ENST00000616815 443 ntBASIC18.9■□□□□ 0.62
SYNE4Q8N205 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC18.9■□□□□ 0.62
SYNE4Q8N205 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC18.9■□□□□ 0.62
SYNE4Q8N205 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
SYNE4Q8N205 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC18.9■□□□□ 0.62
SYNE4Q8N205 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SYNE4Q8N205 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SYNE4Q8N205 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms