Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 AL359258.3-201ENST00000622910 2331 ntBASIC16.03■□□□□ 0.16
CDH6P55285 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CDH6P55285 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
CDH6P55285 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
CDH6P55285 AJ011931.1-201ENST00000618749 2492 ntBASIC16.03■□□□□ 0.16
CDH6P55285 ZBTB45P1-201ENST00000452761 1456 ntBASIC16.03■□□□□ 0.16
CDH6P55285 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
CDH6P55285 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CDH6P55285 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC16.02■□□□□ 0.16
CDH6P55285 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC16.02■□□□□ 0.16
CDH6P55285 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
CDH6P55285 PCDHGB8P-201ENST00000502926 1973 ntBASIC16.02■□□□□ 0.16
CDH6P55285 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CDH6P55285 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
CDH6P55285 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.16
CDH6P55285 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
CDH6P55285 REXO1L4P-201ENST00000605109 1937 ntBASIC16.02■□□□□ 0.16
CDH6P55285 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
CDH6P55285 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
CDH6P55285 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC16.02■□□□□ 0.16
CDH6P55285 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
CDH6P55285 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
CDH6P55285 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
CDH6P55285 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC16.02■□□□□ 0.16
CDH6P55285 HNRNPA1P40-201ENST00000426371 1278 ntBASIC16.02■□□□□ 0.16
CDH6P55285 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC16.02■□□□□ 0.16
CDH6P55285 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC16.02■□□□□ 0.16
CDH6P55285 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC16.02■□□□□ 0.16
CDH6P55285 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.16
CDH6P55285 NAA60-208ENST00000570819 833 ntTSL 2 BASIC16.02■□□□□ 0.16
CDH6P55285 AC011467.4-201ENST00000594891 528 ntBASIC16.02■□□□□ 0.16
CDH6P55285 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC16.02■□□□□ 0.16
CDH6P55285 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
CDH6P55285 REXO1L2P-201ENST00000425429 2069 ntBASIC16.02■□□□□ 0.15
CDH6P55285 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
CDH6P55285 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC16.02■□□□□ 0.15
CDH6P55285 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
CDH6P55285 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC16.02■□□□□ 0.15
CDH6P55285 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
CDH6P55285 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
CDH6P55285 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC16.01■□□□□ 0.15
CDH6P55285 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CDH6P55285 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
CDH6P55285 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
CDH6P55285 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
CDH6P55285 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC16.01■□□□□ 0.15
CDH6P55285 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CDH6P55285 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC16.01■□□□□ 0.15
CDH6P55285 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CDH6P55285 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CDH6P55285 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
CDH6P55285 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CDH6P55285 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
CDH6P55285 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC16.01■□□□□ 0.15
CDH6P55285 GSN-203ENST00000373808 2664 ntTSL 2 BASIC16.01■□□□□ 0.15
CDH6P55285 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CDH6P55285 ACE3P-201ENST00000423435 1973 ntBASIC16.01■□□□□ 0.15
CDH6P55285 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC16.01■□□□□ 0.15
CDH6P55285 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
CDH6P55285 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
CDH6P55285 SYS1-203ENST00000414310 795 ntTSL 3 BASIC16.01■□□□□ 0.15
CDH6P55285 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC16.01■□□□□ 0.15
CDH6P55285 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC16.01■□□□□ 0.15
CDH6P55285 DOC2GP-202ENST00000514950 1163 ntBASIC16.01■□□□□ 0.15
CDH6P55285 REEP4-207ENST00000523293 913 ntTSL 3 BASIC16.01■□□□□ 0.15
CDH6P55285 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC16.01■□□□□ 0.15
CDH6P55285 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC16.01■□□□□ 0.15
CDH6P55285 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC16.01■□□□□ 0.15
CDH6P55285 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC16.01■□□□□ 0.15
CDH6P55285 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CDH6P55285 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CDH6P55285 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CDH6P55285 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC16.01■□□□□ 0.15
CDH6P55285 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC16.01■□□□□ 0.15
CDH6P55285 AC012508.2-201ENST00000567613 1472 ntBASIC16.01■□□□□ 0.15
CDH6P55285 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC16.01■□□□□ 0.15
CDH6P55285 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
CDH6P55285 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC16.01■□□□□ 0.15
CDH6P55285 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CDH6P55285 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC16.01■□□□□ 0.15
CDH6P55285 CICP23-201ENST00000605013 2741 ntBASIC16.01■□□□□ 0.15
CDH6P55285 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CDH6P55285 AC013726.1-201ENST00000563747 2285 ntBASIC16.01■□□□□ 0.15
CDH6P55285 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CDH6P55285 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC16.01■□□□□ 0.15
CDH6P55285 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
CDH6P55285 AC106881.1-201ENST00000605849 3329 ntBASIC16.01■□□□□ 0.15
CDH6P55285 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
CDH6P55285 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC16■□□□□ 0.15
CDH6P55285 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
CDH6P55285 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
CDH6P55285 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CDH6P55285 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC16■□□□□ 0.15
CDH6P55285 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC16■□□□□ 0.15
CDH6P55285 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CDH6P55285 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CDH6P55285 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC16■□□□□ 0.15
CDH6P55285 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC16■□□□□ 0.15
CDH6P55285 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
CDH6P55285 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 49.2 ms