Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC14.12□□□□□ -0.15
MSX1P28360 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC14.12□□□□□ -0.15
MSX1P28360 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
MSX1P28360 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC14.12□□□□□ -0.15
MSX1P28360 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
MSX1P28360 SMARCA2-214ENST00000450198 5602 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
MSX1P28360 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
MSX1P28360 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
MSX1P28360 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC14.12□□□□□ -0.15
MSX1P28360 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
MSX1P28360 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
MSX1P28360 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
MSX1P28360 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC14.11□□□□□ -0.15
MSX1P28360 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC14.11□□□□□ -0.15
MSX1P28360 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC14.11□□□□□ -0.15
MSX1P28360 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC14.11□□□□□ -0.15
MSX1P28360 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
MSX1P28360 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
MSX1P28360 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
MSX1P28360 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
MSX1P28360 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
MSX1P28360 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
MSX1P28360 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC14.11□□□□□ -0.15
MSX1P28360 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
MSX1P28360 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
MSX1P28360 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
MSX1P28360 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
MSX1P28360 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
MSX1P28360 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
MSX1P28360 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
MSX1P28360 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
MSX1P28360 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
MSX1P28360 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
MSX1P28360 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
MSX1P28360 BOLA2P3-201ENST00000404566 256 ntBASIC14.11□□□□□ -0.15
MSX1P28360 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
MSX1P28360 API5-202ENST00000420461 2009 ntTSL 2 BASIC14.11□□□□□ -0.15
MSX1P28360 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC14.11□□□□□ -0.15
MSX1P28360 AC012497.1-201ENST00000429392 575 ntBASIC14.11□□□□□ -0.15
MSX1P28360 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC14.11□□□□□ -0.15
MSX1P28360 KRT223P-202ENST00000449164 1292 ntBASIC14.11□□□□□ -0.15
MSX1P28360 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC14.11□□□□□ -0.15
MSX1P28360 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC14.11□□□□□ -0.15
MSX1P28360 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
MSX1P28360 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC14.11□□□□□ -0.15
MSX1P28360 GAPDHP40-201ENST00000505218 1006 ntBASIC14.11□□□□□ -0.15
MSX1P28360 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC14.11□□□□□ -0.15
MSX1P28360 AC026410.3-201ENST00000514280 936 ntBASIC14.11□□□□□ -0.15
MSX1P28360 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
MSX1P28360 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
MSX1P28360 AC092552.1-201ENST00000547243 906 ntBASIC14.11□□□□□ -0.15
MSX1P28360 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC14.11□□□□□ -0.15
MSX1P28360 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC14.11□□□□□ -0.15
MSX1P28360 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC14.11□□□□□ -0.15
MSX1P28360 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC14.11□□□□□ -0.15
MSX1P28360 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC14.11□□□□□ -0.15
MSX1P28360 AC133552.6-201ENST00000613406 534 ntBASIC14.11□□□□□ -0.15
MSX1P28360 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC14.11□□□□□ -0.15
MSX1P28360 AL033527.4-201ENST00000641026 673 ntBASIC14.11□□□□□ -0.15
MSX1P28360 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC14.11□□□□□ -0.15
MSX1P28360 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
MSX1P28360 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
MSX1P28360 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
MSX1P28360 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
MSX1P28360 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
MSX1P28360 AC112693.3-201ENST00000624819 1983 ntBASIC14.11□□□□□ -0.15
MSX1P28360 KRT8P44-201ENST00000441609 1350 ntBASIC14.1□□□□□ -0.15
MSX1P28360 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
MSX1P28360 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
MSX1P28360 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC14.1□□□□□ -0.15
MSX1P28360 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
MSX1P28360 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
MSX1P28360 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC14.1□□□□□ -0.15
MSX1P28360 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
MSX1P28360 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
MSX1P28360 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
MSX1P28360 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
MSX1P28360 DRD5P1-201ENST00000456605 1438 ntBASIC14.1□□□□□ -0.15
MSX1P28360 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
MSX1P28360 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
MSX1P28360 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
MSX1P28360 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC14.1□□□□□ -0.15
MSX1P28360 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC14.1□□□□□ -0.15
MSX1P28360 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC14.1□□□□□ -0.15
MSX1P28360 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC14.1□□□□□ -0.15
MSX1P28360 GHSR-202ENST00000427970 912 ntBASIC14.1□□□□□ -0.15
MSX1P28360 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
MSX1P28360 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC14.1□□□□□ -0.15
MSX1P28360 AC004066.1-201ENST00000502488 802 ntBASIC14.1□□□□□ -0.15
MSX1P28360 AC119751.2-201ENST00000504529 210 ntBASIC14.1□□□□□ -0.15
MSX1P28360 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC14.1□□□□□ -0.15
MSX1P28360 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC14.1□□□□□ -0.15
MSX1P28360 MIR4259-201ENST00000584466 101 ntBASIC14.1□□□□□ -0.15
MSX1P28360 INO80C-210ENST00000590757 595 ntTSL 2 BASIC14.1□□□□□ -0.15
MSX1P28360 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC14.1□□□□□ -0.15
MSX1P28360 AC008735.3-201ENST00000596646 500 ntBASIC14.1□□□□□ -0.15
MSX1P28360 MIR8072-201ENST00000614241 80 ntBASIC14.1□□□□□ -0.15
MSX1P28360 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
MSX1P28360 AL033527.5-201ENST00000641382 801 ntBASIC14.1□□□□□ -0.15
MSX1P28360 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms