Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
MSH4O15457 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC17.18■□□□□ 0.34
MSH4O15457 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
MSH4O15457 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
MSH4O15457 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
MSH4O15457 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
MSH4O15457 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
MSH4O15457 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC17.18■□□□□ 0.34
MSH4O15457 CTBP2P5-201ENST00000454986 1264 ntBASIC17.18■□□□□ 0.34
MSH4O15457 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC17.18■□□□□ 0.34
MSH4O15457 AP000812.2-201ENST00000538934 718 ntBASIC17.18■□□□□ 0.34
MSH4O15457 KRT90P-201ENST00000549264 1064 ntBASIC17.18■□□□□ 0.34
MSH4O15457 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC17.18■□□□□ 0.34
MSH4O15457 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC17.18■□□□□ 0.34
MSH4O15457 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC17.18■□□□□ 0.34
MSH4O15457 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
MSH4O15457 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
MSH4O15457 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
MSH4O15457 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC17.18■□□□□ 0.34
MSH4O15457 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC17.18■□□□□ 0.34
MSH4O15457 FOS-202ENST00000535987 1402 ntTSL 2 BASIC17.18■□□□□ 0.34
MSH4O15457 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
MSH4O15457 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
MSH4O15457 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
MSH4O15457 AC104640.1-201ENST00000562617 2109 ntBASIC17.18■□□□□ 0.34
MSH4O15457 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
MSH4O15457 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC17.18■□□□□ 0.34
MSH4O15457 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
MSH4O15457 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC17.18■□□□□ 0.34
MSH4O15457 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
MSH4O15457 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
MSH4O15457 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
MSH4O15457 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
MSH4O15457 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC17.17■□□□□ 0.34
MSH4O15457 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC17.17■□□□□ 0.34
MSH4O15457 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC17.17■□□□□ 0.34
MSH4O15457 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
MSH4O15457 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
MSH4O15457 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
MSH4O15457 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
MSH4O15457 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
MSH4O15457 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
MSH4O15457 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
MSH4O15457 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
MSH4O15457 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
MSH4O15457 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC17.17■□□□□ 0.34
MSH4O15457 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
MSH4O15457 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC17.17■□□□□ 0.34
MSH4O15457 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC17.17■□□□□ 0.34
MSH4O15457 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC17.17■□□□□ 0.34
MSH4O15457 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC17.17■□□□□ 0.34
MSH4O15457 RPL7P3-201ENST00000441388 714 ntBASIC17.17■□□□□ 0.34
MSH4O15457 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC17.17■□□□□ 0.34
MSH4O15457 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
MSH4O15457 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
MSH4O15457 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC17.17■□□□□ 0.34
MSH4O15457 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
MSH4O15457 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC17.17■□□□□ 0.34
MSH4O15457 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC17.17■□□□□ 0.34
MSH4O15457 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC17.17■□□□□ 0.34
MSH4O15457 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
MSH4O15457 RPS24-214ENST00000613865 538 ntTSL 5 BASIC17.17■□□□□ 0.34
MSH4O15457 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC17.17■□□□□ 0.34
MSH4O15457 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC17.17■□□□□ 0.34
MSH4O15457 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
MSH4O15457 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
MSH4O15457 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC17.17■□□□□ 0.34
MSH4O15457 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC17.17■□□□□ 0.34
MSH4O15457 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC17.17■□□□□ 0.34
MSH4O15457 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC17.17■□□□□ 0.34
MSH4O15457 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
MSH4O15457 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
MSH4O15457 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
MSH4O15457 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
MSH4O15457 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
MSH4O15457 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
MSH4O15457 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
MSH4O15457 LILRP1-201ENST00000444199 1370 ntBASIC17.16■□□□□ 0.34
MSH4O15457 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
MSH4O15457 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
MSH4O15457 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
MSH4O15457 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
MSH4O15457 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
MSH4O15457 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC17.16■□□□□ 0.34
MSH4O15457 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
MSH4O15457 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC17.16■□□□□ 0.34
MSH4O15457 AC055811.4-201ENST00000624039 1754 ntBASIC17.16■□□□□ 0.34
MSH4O15457 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
MSH4O15457 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
MSH4O15457 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
MSH4O15457 GUK1-206ENST00000366723 845 ntTSL 5 BASIC17.16■□□□□ 0.34
MSH4O15457 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
MSH4O15457 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
MSH4O15457 MIR658-201ENST00000385210 100 ntBASIC17.16■□□□□ 0.34
MSH4O15457 CNN2P8-201ENST00000421872 913 ntBASIC17.16■□□□□ 0.34
MSH4O15457 FAM197Y7-201ENST00000432892 766 ntBASIC17.16■□□□□ 0.34
MSH4O15457 C2orf27AP3-201ENST00000434123 579 ntBASIC17.16■□□□□ 0.34
MSH4O15457 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC17.16■□□□□ 0.34
MSH4O15457 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC17.16■□□□□ 0.34
MSH4O15457 KLF2P4-201ENST00000451959 1225 ntBASIC17.16■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 46.9 ms