Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC11.32□□□□□ -0.6
SMKR1H3BMG3 MIR4751-201ENST00000578027 74 ntBASIC11.32□□□□□ -0.6
SMKR1H3BMG3 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
SMKR1H3BMG3 CLEC4GP1-201ENST00000596555 870 ntBASIC11.32□□□□□ -0.6
SMKR1H3BMG3 AC005593.1-201ENST00000624894 515 ntBASIC11.32□□□□□ -0.6
SMKR1H3BMG3 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
SMKR1H3BMG3 COL4A1-201ENST00000375820 6532 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
SMKR1H3BMG3 ITGB3-201ENST00000559488 3995 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
SMKR1H3BMG3 GIT1-211ENST00000581348 2827 ntAPPRIS ALT2 TSL 2 BASIC11.32□□□□□ -0.6
SMKR1H3BMG3 RLIM-202ENST00000349225 3478 ntAPPRIS P1 TSL 2 BASIC11.32□□□□□ -0.6
SMKR1H3BMG3 ADAM33-201ENST00000350009 3480 ntAPPRIS ALT2 TSL 5 BASIC11.32□□□□□ -0.6
SMKR1H3BMG3 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
SMKR1H3BMG3 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC11.32□□□□□ -0.6
SMKR1H3BMG3 DOCK4-206ENST00000437633 6212 ntAPPRIS P2 TSL 1 (best) BASIC11.32□□□□□ -0.6
SMKR1H3BMG3 GRM1-203ENST00000361719 6754 ntAPPRIS P3 TSL 5 BASIC11.32□□□□□ -0.6
SMKR1H3BMG3 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC11.32□□□□□ -0.6
SMKR1H3BMG3 CHFR-205ENST00000450056 3250 ntTSL 2 BASIC11.32□□□□□ -0.6
SMKR1H3BMG3 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
SMKR1H3BMG3 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
SMKR1H3BMG3 LINC00841-201ENST00000451929 2126 ntTSL 2 BASIC11.32□□□□□ -0.6
SMKR1H3BMG3 MYLK-203ENST00000359169 7585 ntAPPRIS P3 TSL 5 BASIC11.32□□□□□ -0.6
SMKR1H3BMG3 ITGB2-203ENST00000355153 2913 ntAPPRIS P1 TSL 2 BASIC11.32□□□□□ -0.6
SMKR1H3BMG3 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC11.32□□□□□ -0.6
SMKR1H3BMG3 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
SMKR1H3BMG3 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
SMKR1H3BMG3 KIAA1217-203ENST00000376452 6052 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
SMKR1H3BMG3 SELENON-202ENST00000361547 4334 ntAPPRIS P4 TSL 1 (best) BASIC11.31□□□□□ -0.6
SMKR1H3BMG3 PRKCB-201ENST00000303531 7969 ntAPPRIS P4 TSL 1 (best) BASIC11.31□□□□□ -0.6
SMKR1H3BMG3 TMEM2-202ENST00000377044 6523 ntAPPRIS P3 TSL 1 (best) BASIC11.31□□□□□ -0.6
SMKR1H3BMG3 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC11.31□□□□□ -0.6
SMKR1H3BMG3 TET3-201ENST00000305799 5174 ntTSL 5 BASIC11.31□□□□□ -0.6
SMKR1H3BMG3 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC11.31□□□□□ -0.6
SMKR1H3BMG3 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC11.31□□□□□ -0.6
SMKR1H3BMG3 MPI-203ENST00000535694 1523 ntTSL 2 BASIC11.31□□□□□ -0.6
SMKR1H3BMG3 DCUN1D4-201ENST00000334635 4312 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
SMKR1H3BMG3 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
SMKR1H3BMG3 CDC25B-205ENST00000439880 3096 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
SMKR1H3BMG3 DHTKD1-201ENST00000263035 5159 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
SMKR1H3BMG3 MAP3K21-202ENST00000366623 3910 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
SMKR1H3BMG3 ENDOV-206ENST00000518901 2549 ntTSL 2 BASIC11.31□□□□□ -0.6
SMKR1H3BMG3 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC11.31□□□□□ -0.6
SMKR1H3BMG3 SLFNL1-204ENST00000372613 2654 ntTSL 2 BASIC11.31□□□□□ -0.6
SMKR1H3BMG3 TRIM10-204ENST00000449742 3546 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
SMKR1H3BMG3 BICDL2-204ENST00000573514 3519 ntTSL 2 BASIC11.31□□□□□ -0.6
SMKR1H3BMG3 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC11.31□□□□□ -0.6
SMKR1H3BMG3 NRIP3-201ENST00000309166 3809 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
SMKR1H3BMG3 DFFB-203ENST00000341385 572 ntTSL 5 BASIC11.31□□□□□ -0.6
SMKR1H3BMG3 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
SMKR1H3BMG3 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
SMKR1H3BMG3 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
SMKR1H3BMG3 MED22-202ENST00000371999 987 ntTSL 3 BASIC11.31□□□□□ -0.6
SMKR1H3BMG3 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC11.31□□□□□ -0.6
SMKR1H3BMG3 DDT-204ENST00000404092 805 ntTSL 3 BASIC11.31□□□□□ -0.6
SMKR1H3BMG3 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC11.31□□□□□ -0.6
SMKR1H3BMG3 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC11.31□□□□□ -0.6
SMKR1H3BMG3 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
SMKR1H3BMG3 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC11.31□□□□□ -0.6
SMKR1H3BMG3 AC109635.5-201ENST00000533593 962 ntBASIC11.31□□□□□ -0.6
SMKR1H3BMG3 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC11.31□□□□□ -0.6
SMKR1H3BMG3 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC11.31□□□□□ -0.6
SMKR1H3BMG3 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC11.31□□□□□ -0.6
SMKR1H3BMG3 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
SMKR1H3BMG3 AP000550.4-202ENST00000639755 178 ntBASIC11.31□□□□□ -0.6
SMKR1H3BMG3 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC11.31□□□□□ -0.6
SMKR1H3BMG3 TPD52L2-206ENST00000358548 2275 ntTSL 2 BASIC11.31□□□□□ -0.6
SMKR1H3BMG3 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
SMKR1H3BMG3 HES2-201ENST00000377834 4262 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
SMKR1H3BMG3 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
SMKR1H3BMG3 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
SMKR1H3BMG3 CILP2-201ENST00000291495 4199 ntAPPRIS P2 TSL 1 (best) BASIC11.31□□□□□ -0.6
SMKR1H3BMG3 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC11.31□□□□□ -0.6
SMKR1H3BMG3 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
SMKR1H3BMG3 AC152010.1-201ENST00000415779 2006 ntBASIC11.31□□□□□ -0.6
SMKR1H3BMG3 CSF1-201ENST00000329608 4210 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
SMKR1H3BMG3 CLASRP-204ENST00000544944 2769 ntAPPRIS ALT2 TSL 2 BASIC11.31□□□□□ -0.6
SMKR1H3BMG3 PELP1-202ENST00000436683 3524 ntTSL 2 BASIC11.31□□□□□ -0.6
SMKR1H3BMG3 CAMK2B-217ENST00000457475 4142 ntTSL 5 BASIC11.31□□□□□ -0.6
SMKR1H3BMG3 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
SMKR1H3BMG3 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC11.31□□□□□ -0.6
SMKR1H3BMG3 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC11.31□□□□□ -0.6
SMKR1H3BMG3 ACSM1-201ENST00000307493 2051 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
SMKR1H3BMG3 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC11.31□□□□□ -0.6
SMKR1H3BMG3 AC109583.3-201ENST00000641183 3128 ntAPPRIS P1 BASIC11.31□□□□□ -0.6
SMKR1H3BMG3 DMBT1P1-203ENST00000636837 4628 ntBASIC11.31□□□□□ -0.6
SMKR1H3BMG3 TOLLIP-202ENST00000317204 3617 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
SMKR1H3BMG3 PHKG1-210ENST00000537360 2139 ntAPPRIS ALT1 TSL 1 (best) BASIC11.3□□□□□ -0.6
SMKR1H3BMG3 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC11.3□□□□□ -0.6
SMKR1H3BMG3 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
SMKR1H3BMG3 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC11.3□□□□□ -0.6
SMKR1H3BMG3 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
SMKR1H3BMG3 NRXN1-222ENST00000625672 8113 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
SMKR1H3BMG3 FAM156A-221ENST00000622447 3757 ntAPPRIS P2 TSL 1 (best) BASIC11.3□□□□□ -0.6
SMKR1H3BMG3 NAXD-201ENST00000309957 2659 ntAPPRIS P1 TSL 2 BASIC11.3□□□□□ -0.6
SMKR1H3BMG3 POU6F1-208ENST00000550824 2664 ntTSL 5 BASIC11.3□□□□□ -0.6
SMKR1H3BMG3 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC11.3□□□□□ -0.6
SMKR1H3BMG3 EHD1-202ENST00000359393 3618 ntAPPRIS P1 TSL 2 BASIC11.3□□□□□ -0.6
SMKR1H3BMG3 FFAR4-201ENST00000371481 3605 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
SMKR1H3BMG3 HDAC9-208ENST00000417496 2524 ntTSL 2 BASIC11.3□□□□□ -0.6
SMKR1H3BMG3 ASF1A-201ENST00000229595 2362 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
SMKR1H3BMG3 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Retrieved 100 of 98,524 protein–RNA pairs in 45.5 ms