Protein–RNA interactions for Protein: Q8TBC3

SHKBP1, SH3KBP1-binding protein 1, humanhuman

Predictions only

Length 707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1Q8TBC3 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SHKBP1Q8TBC3 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
SHKBP1Q8TBC3 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
SHKBP1Q8TBC3 AC020907.1-201ENST00000616460 1350 ntBASIC16.14■□□□□ 0.17
SHKBP1Q8TBC3 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SHKBP1Q8TBC3 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
SHKBP1Q8TBC3 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SHKBP1Q8TBC3 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC16.14■□□□□ 0.17
SHKBP1Q8TBC3 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC16.14■□□□□ 0.17
SHKBP1Q8TBC3 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SHKBP1Q8TBC3 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC16.14■□□□□ 0.17
SHKBP1Q8TBC3 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SHKBP1Q8TBC3 AC006001.1-201ENST00000325130 474 ntBASIC16.14■□□□□ 0.17
SHKBP1Q8TBC3 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
SHKBP1Q8TBC3 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
SHKBP1Q8TBC3 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC16.14■□□□□ 0.17
SHKBP1Q8TBC3 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
SHKBP1Q8TBC3 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC16.14■□□□□ 0.17
SHKBP1Q8TBC3 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC16.14■□□□□ 0.17
SHKBP1Q8TBC3 AGER-214ENST00000538695 487 ntTSL 2 BASIC16.14■□□□□ 0.17
SHKBP1Q8TBC3 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC16.14■□□□□ 0.17
SHKBP1Q8TBC3 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC16.14■□□□□ 0.17
SHKBP1Q8TBC3 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
SHKBP1Q8TBC3 AC025181.2-201ENST00000606994 802 ntBASIC16.14■□□□□ 0.17
SHKBP1Q8TBC3 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC16.14■□□□□ 0.17
SHKBP1Q8TBC3 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
SHKBP1Q8TBC3 AC138951.2-201ENST00000623455 1161 ntBASIC16.14■□□□□ 0.17
SHKBP1Q8TBC3 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
SHKBP1Q8TBC3 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC16.14■□□□□ 0.17
SHKBP1Q8TBC3 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SHKBP1Q8TBC3 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC16.14■□□□□ 0.17
SHKBP1Q8TBC3 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SHKBP1Q8TBC3 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
SHKBP1Q8TBC3 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC16.14■□□□□ 0.17
SHKBP1Q8TBC3 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
SHKBP1Q8TBC3 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC16.14■□□□□ 0.17
SHKBP1Q8TBC3 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
SHKBP1Q8TBC3 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
SHKBP1Q8TBC3 AL133338.1-201ENST00000565695 1517 ntBASIC16.14■□□□□ 0.17
SHKBP1Q8TBC3 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SHKBP1Q8TBC3 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
SHKBP1Q8TBC3 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC16.14■□□□□ 0.17
SHKBP1Q8TBC3 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC16.14■□□□□ 0.17
SHKBP1Q8TBC3 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SHKBP1Q8TBC3 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC16.13■□□□□ 0.17
SHKBP1Q8TBC3 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SHKBP1Q8TBC3 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SHKBP1Q8TBC3 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SHKBP1Q8TBC3 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SHKBP1Q8TBC3 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SHKBP1Q8TBC3 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SHKBP1Q8TBC3 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SHKBP1Q8TBC3 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SHKBP1Q8TBC3 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SHKBP1Q8TBC3 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
SHKBP1Q8TBC3 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC16.13■□□□□ 0.17
SHKBP1Q8TBC3 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SHKBP1Q8TBC3 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
SHKBP1Q8TBC3 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SHKBP1Q8TBC3 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC16.13■□□□□ 0.17
SHKBP1Q8TBC3 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
SHKBP1Q8TBC3 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
SHKBP1Q8TBC3 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SHKBP1Q8TBC3 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
SHKBP1Q8TBC3 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
SHKBP1Q8TBC3 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC16.13■□□□□ 0.17
SHKBP1Q8TBC3 CD74-212ENST00000524315 584 ntTSL 5 BASIC16.13■□□□□ 0.17
SHKBP1Q8TBC3 AC023310.1-201ENST00000554836 735 ntBASIC16.13■□□□□ 0.17
SHKBP1Q8TBC3 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SHKBP1Q8TBC3 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SHKBP1Q8TBC3 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SHKBP1Q8TBC3 AP005117.1-202ENST00000581724 1908 ntBASIC16.13■□□□□ 0.17
SHKBP1Q8TBC3 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SHKBP1Q8TBC3 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC16.13■□□□□ 0.17
SHKBP1Q8TBC3 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SHKBP1Q8TBC3 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SHKBP1Q8TBC3 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC16.13■□□□□ 0.17
SHKBP1Q8TBC3 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
SHKBP1Q8TBC3 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC16.13■□□□□ 0.17
SHKBP1Q8TBC3 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SHKBP1Q8TBC3 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
SHKBP1Q8TBC3 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SHKBP1Q8TBC3 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC16.12■□□□□ 0.17
SHKBP1Q8TBC3 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
SHKBP1Q8TBC3 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC16.12■□□□□ 0.17
SHKBP1Q8TBC3 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SHKBP1Q8TBC3 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
SHKBP1Q8TBC3 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC16.12■□□□□ 0.17
SHKBP1Q8TBC3 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SHKBP1Q8TBC3 STK24-203ENST00000397517 4578 ntTSL 2 BASIC16.12■□□□□ 0.17
SHKBP1Q8TBC3 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SHKBP1Q8TBC3 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC16.12■□□□□ 0.17
SHKBP1Q8TBC3 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
SHKBP1Q8TBC3 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
SHKBP1Q8TBC3 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SHKBP1Q8TBC3 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
SHKBP1Q8TBC3 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
SHKBP1Q8TBC3 SNX18-202ENST00000343017 3140 ntBASIC16.12■□□□□ 0.17
SHKBP1Q8TBC3 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SHKBP1Q8TBC3 RNU1-114P-201ENST00000365297 166 ntBASIC16.12■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms