Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 AL592076.1-201ENST00000424448 303 ntBASIC17.72■□□□□ 0.43
CTCFP49711 KLK11-204ENST00000453757 1174 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
CTCFP49711 AC117500.3-201ENST00000537032 666 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CTCFP49711 SLC25A21-203ENST00000555449 1023 ntAPPRIS ALT1 TSL 2 BASIC17.72■□□□□ 0.43
CTCFP49711 AC027139.1-201ENST00000565286 951 ntBASIC17.72■□□□□ 0.43
CTCFP49711 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CTCFP49711 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CTCFP49711 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
CTCFP49711 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC17.72■□□□□ 0.43
CTCFP49711 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CTCFP49711 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC17.72■□□□□ 0.43
CTCFP49711 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CTCFP49711 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC17.72■□□□□ 0.43
CTCFP49711 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
CTCFP49711 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
CTCFP49711 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CTCFP49711 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CTCFP49711 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CTCFP49711 SCGN-203ENST00000612225 1402 ntTSL 5 BASIC17.72■□□□□ 0.43
CTCFP49711 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CTCFP49711 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC17.72■□□□□ 0.43
CTCFP49711 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
CTCFP49711 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
CTCFP49711 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CTCFP49711 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC17.71■□□□□ 0.43
CTCFP49711 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
CTCFP49711 AC078925.2-201ENST00000624013 1973 ntBASIC17.71■□□□□ 0.43
CTCFP49711 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC17.71■□□□□ 0.43
CTCFP49711 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
CTCFP49711 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC17.71■□□□□ 0.43
CTCFP49711 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CTCFP49711 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CTCFP49711 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC17.71■□□□□ 0.43
CTCFP49711 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CTCFP49711 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
CTCFP49711 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC17.71■□□□□ 0.43
CTCFP49711 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CTCFP49711 AC136604.1-201ENST00000418535 575 ntBASIC17.71■□□□□ 0.43
CTCFP49711 AREG-202ENST00000502307 956 ntTSL 5 BASIC17.71■□□□□ 0.43
CTCFP49711 NME1-NME2-203ENST00000555572 1193 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
CTCFP49711 AL132642.1-201ENST00000557646 553 ntTSL 4 BASIC17.71■□□□□ 0.43
CTCFP49711 PTPN20CP-201ENST00000614090 920 ntBASIC17.71■□□□□ 0.43
CTCFP49711 AC105137.3-201ENST00000617588 984 ntBASIC17.71■□□□□ 0.43
CTCFP49711 AC092299.1-201ENST00000632679 757 ntBASIC17.71■□□□□ 0.43
CTCFP49711 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
CTCFP49711 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
CTCFP49711 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC17.71■□□□□ 0.43
CTCFP49711 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC17.71■□□□□ 0.43
CTCFP49711 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
CTCFP49711 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CTCFP49711 KIAA1614-AS1-201ENST00000415647 1440 ntTSL 2 BASIC17.71■□□□□ 0.43
CTCFP49711 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC17.71■□□□□ 0.43
CTCFP49711 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CTCFP49711 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC17.71■□□□□ 0.43
CTCFP49711 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
CTCFP49711 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
CTCFP49711 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
CTCFP49711 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.42
CTCFP49711 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC17.71■□□□□ 0.42
CTCFP49711 BNIP3P1-202ENST00000550043 1585 ntBASIC17.7■□□□□ 0.42
CTCFP49711 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CTCFP49711 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC17.7■□□□□ 0.42
CTCFP49711 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC17.7■□□□□ 0.42
CTCFP49711 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CTCFP49711 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CTCFP49711 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC17.7■□□□□ 0.42
CTCFP49711 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
CTCFP49711 DKK4-201ENST00000220812 894 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CTCFP49711 MC3R-201ENST00000243911 1084 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
CTCFP49711 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CTCFP49711 BAK1P1-201ENST00000317045 636 ntBASIC17.7■□□□□ 0.42
CTCFP49711 Z69890.1-201ENST00000382990 339 ntBASIC17.7■□□□□ 0.42
CTCFP49711 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
CTCFP49711 AP1B1P1-201ENST00000432373 827 ntTSL 3 BASIC17.7■□□□□ 0.42
CTCFP49711 AL591242.1-203ENST00000434329 374 ntTSL 3 BASIC17.7■□□□□ 0.42
CTCFP49711 SOX9-AS1-207ENST00000446332 443 ntTSL 2 BASIC17.7■□□□□ 0.42
CTCFP49711 PHKG1P2-201ENST00000457537 863 ntBASIC17.7■□□□□ 0.42
CTCFP49711 RN7SL67P-201ENST00000492147 296 ntBASIC17.7■□□□□ 0.42
CTCFP49711 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC17.7■□□□□ 0.42
CTCFP49711 NPTN-204ENST00000562924 1094 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CTCFP49711 AC103808.3-201ENST00000579714 598 ntTSL 5 BASIC17.7■□□□□ 0.42
CTCFP49711 FAM104A-206ENST00000583024 417 ntTSL 3 BASIC17.7■□□□□ 0.42
CTCFP49711 AC005324.6-201ENST00000587972 613 ntBASIC17.7■□□□□ 0.42
CTCFP49711 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CTCFP49711 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC17.7■□□□□ 0.42
CTCFP49711 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
CTCFP49711 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
CTCFP49711 LINC00554-201ENST00000564841 3011 ntBASIC17.7■□□□□ 0.42
CTCFP49711 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
CTCFP49711 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
CTCFP49711 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC17.7■□□□□ 0.42
CTCFP49711 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
CTCFP49711 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CTCFP49711 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
CTCFP49711 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
CTCFP49711 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CTCFP49711 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC17.7■□□□□ 0.42
CTCFP49711 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC17.69■□□□□ 0.42
CTCFP49711 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CTCFP49711 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 70.5 ms