Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC14.77□□□□□ -0.05
MSX2P35548 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC14.77□□□□□ -0.05
MSX2P35548 AC004877.2-201ENST00000623941 599 ntBASIC14.77□□□□□ -0.05
MSX2P35548 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
MSX2P35548 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
MSX2P35548 ARHGAP45-202ENST00000539243 4184 ntAPPRIS ALT2 TSL 2 BASIC14.77□□□□□ -0.05
MSX2P35548 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
MSX2P35548 RAB43-202ENST00000393304 4230 ntAPPRIS P1 TSL 4 BASIC14.77□□□□□ -0.05
MSX2P35548 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC14.77□□□□□ -0.05
MSX2P35548 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
MSX2P35548 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
MSX2P35548 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC14.76□□□□□ -0.05
MSX2P35548 ENDOV-206ENST00000518901 2549 ntTSL 2 BASIC14.76□□□□□ -0.05
MSX2P35548 PEX5L-215ENST00000485199 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
MSX2P35548 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC14.76□□□□□ -0.05
MSX2P35548 TGIF2-201ENST00000373872 3406 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
MSX2P35548 LHX1-201ENST00000614239 3425 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
MSX2P35548 POLM-202ENST00000335195 2444 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
MSX2P35548 HDAC11-213ENST00000437379 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
MSX2P35548 MSH5-201ENST00000375703 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
MSX2P35548 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
MSX2P35548 BCAR1-209ENST00000546196 1340 ntBASIC14.76□□□□□ -0.05
MSX2P35548 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
MSX2P35548 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC14.76□□□□□ -0.05
MSX2P35548 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
MSX2P35548 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
MSX2P35548 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
MSX2P35548 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
MSX2P35548 ELP6-209ENST00000446787 894 ntTSL 3 BASIC14.76□□□□□ -0.05
MSX2P35548 EMBP1-201ENST00000458200 901 ntBASIC14.76□□□□□ -0.05
MSX2P35548 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
MSX2P35548 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC14.76□□□□□ -0.05
MSX2P35548 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
MSX2P35548 CD63-210ENST00000550776 870 ntTSL 5 BASIC14.76□□□□□ -0.05
MSX2P35548 AC018845.2-201ENST00000568326 409 ntBASIC14.76□□□□□ -0.05
MSX2P35548 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC14.76□□□□□ -0.05
MSX2P35548 FAM120C-201ENST00000328235 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
MSX2P35548 PML-201ENST00000268058 4508 ntAPPRIS P4 TSL 1 (best) BASIC14.76□□□□□ -0.05
MSX2P35548 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC14.76□□□□□ -0.05
MSX2P35548 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
MSX2P35548 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC14.76□□□□□ -0.05
MSX2P35548 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
MSX2P35548 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
MSX2P35548 ANK1-201ENST00000265709 6379 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
MSX2P35548 KBTBD4-202ENST00000430070 2372 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
MSX2P35548 SCYL1-205ENST00000524944 2715 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
MSX2P35548 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC14.76□□□□□ -0.05
MSX2P35548 CSF1-201ENST00000329608 4210 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
MSX2P35548 DYDC2-204ENST00000372199 2254 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
MSX2P35548 TMEM212-201ENST00000334567 1881 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
MSX2P35548 TBC1D1-201ENST00000261439 5700 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
MSX2P35548 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
MSX2P35548 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
MSX2P35548 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
MSX2P35548 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
MSX2P35548 GDPD5-201ENST00000336898 3523 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
MSX2P35548 AC018442.1-201ENST00000421439 2061 ntBASIC14.75□□□□□ -0.05
MSX2P35548 XPR1-201ENST00000367589 4126 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
MSX2P35548 FES-202ENST00000394300 2302 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
MSX2P35548 NCKAP5L-201ENST00000335999 4900 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
MSX2P35548 SIMC1-205ENST00000443967 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
MSX2P35548 MBLAC2-202ENST00000514906 1936 ntBASIC14.75□□□□□ -0.05
MSX2P35548 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC14.75□□□□□ -0.05
MSX2P35548 ZNF747-202ENST00000395094 3504 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
MSX2P35548 CSF3-203ENST00000394148 622 ntTSL 3 BASIC14.75□□□□□ -0.05
MSX2P35548 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC14.75□□□□□ -0.05
MSX2P35548 SDHD-206ENST00000528182 754 ntTSL 3 BASIC14.75□□□□□ -0.05
MSX2P35548 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC14.75□□□□□ -0.05
MSX2P35548 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC14.75□□□□□ -0.05
MSX2P35548 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC14.75□□□□□ -0.05
MSX2P35548 AL161645.1-201ENST00000622716 1255 ntBASIC14.75□□□□□ -0.05
MSX2P35548 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC14.75□□□□□ -0.05
MSX2P35548 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
MSX2P35548 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC14.75□□□□□ -0.05
MSX2P35548 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
MSX2P35548 IL13RA1-202ENST00000371666 4036 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
MSX2P35548 KDELC2-201ENST00000323468 4312 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
MSX2P35548 ITGAV-201ENST00000261023 7030 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
MSX2P35548 SWAP70-201ENST00000318950 4882 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
MSX2P35548 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC14.75□□□□□ -0.05
MSX2P35548 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC14.75□□□□□ -0.05
MSX2P35548 C9orf152-201ENST00000400613 2717 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
MSX2P35548 EML4-203ENST00000402711 3568 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
MSX2P35548 LINC00863-201ENST00000439559 3287 ntTSL 5 BASIC14.75□□□□□ -0.05
MSX2P35548 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
MSX2P35548 ACSM1-201ENST00000307493 2051 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
MSX2P35548 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
MSX2P35548 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
MSX2P35548 AC152010.1-201ENST00000415779 2006 ntBASIC14.75□□□□□ -0.05
MSX2P35548 TYK2-210ENST00000529370 3176 ntTSL 2 BASIC14.75□□□□□ -0.05
MSX2P35548 SEZ6-203ENST00000360295 4306 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
MSX2P35548 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC14.75□□□□□ -0.05
MSX2P35548 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
MSX2P35548 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
MSX2P35548 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
MSX2P35548 SH3KBP1-205ENST00000397821 4731 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
MSX2P35548 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC14.74□□□□□ -0.05
MSX2P35548 FGFR3-201ENST00000260795 4132 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
MSX2P35548 FAM219A-203ENST00000379080 3591 ntTSL 2 BASIC14.74□□□□□ -0.05
MSX2P35548 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms