Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL9A1P20849 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL9A1P20849 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC15.68■□□□□ 0.1
COL9A1P20849 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL9A1P20849 PKD1P1-201ENST00000458669 6805 ntBASIC15.68■□□□□ 0.1
COL9A1P20849 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL9A1P20849 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC15.68■□□□□ 0.1
COL9A1P20849 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL9A1P20849 KRT8P29-201ENST00000420409 1371 ntBASIC15.68■□□□□ 0.1
COL9A1P20849 NPFF-201ENST00000267017 592 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL9A1P20849 SUMO4-201ENST00000326669 1066 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
COL9A1P20849 MT1E-202ENST00000330439 729 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
COL9A1P20849 C1orf53-201ENST00000367393 588 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL9A1P20849 MACROD2-204ENST00000407045 727 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
COL9A1P20849 AL139339.1-201ENST00000411906 657 ntTSL 2 BASIC15.68■□□□□ 0.1
COL9A1P20849 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
COL9A1P20849 AC004895.1-203ENST00000428901 540 ntTSL 4 BASIC15.68■□□□□ 0.1
COL9A1P20849 AC098934.1-204ENST00000430114 631 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
COL9A1P20849 TREX1-202ENST00000444177 1200 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
COL9A1P20849 RPP40-203ENST00000464646 1042 ntTSL 5 BASIC15.68■□□□□ 0.1
COL9A1P20849 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC15.68■□□□□ 0.1
COL9A1P20849 FRMD4A-208ENST00000493380 1149 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
COL9A1P20849 AC104629.1-201ENST00000494226 508 ntBASIC15.68■□□□□ 0.1
COL9A1P20849 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL9A1P20849 LINC00461-207ENST00000506978 564 ntTSL 5 BASIC15.68■□□□□ 0.1
COL9A1P20849 AC087273.1-201ENST00000519368 529 ntTSL 2 BASIC15.68■□□□□ 0.1
COL9A1P20849 AC090857.1-201ENST00000527400 390 ntBASIC15.68■□□□□ 0.1
COL9A1P20849 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC15.68■□□□□ 0.1
COL9A1P20849 RN7SL163P-201ENST00000583100 276 ntBASIC15.68■□□□□ 0.1
COL9A1P20849 PIN1-207ENST00000588695 648 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
COL9A1P20849 AC011451.1-201ENST00000591336 405 ntTSL 3 BASIC15.68■□□□□ 0.1
COL9A1P20849 AC005779.2-201ENST00000593083 550 ntAPPRIS P1 TSL 4 BASIC15.68■□□□□ 0.1
COL9A1P20849 AL139339.2-201ENST00000608063 657 ntBASIC15.68■□□□□ 0.1
COL9A1P20849 AP005019.2-201ENST00000615104 511 ntBASIC15.68■□□□□ 0.1
COL9A1P20849 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL9A1P20849 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL9A1P20849 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC15.68■□□□□ 0.1
COL9A1P20849 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL9A1P20849 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC15.68■□□□□ 0.1
COL9A1P20849 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL9A1P20849 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC15.68■□□□□ 0.1
COL9A1P20849 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL9A1P20849 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL9A1P20849 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL9A1P20849 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL9A1P20849 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
COL9A1P20849 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
COL9A1P20849 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
COL9A1P20849 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL9A1P20849 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL9A1P20849 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC15.67■□□□□ 0.1
COL9A1P20849 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
COL9A1P20849 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
COL9A1P20849 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
COL9A1P20849 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
COL9A1P20849 MRPS28-201ENST00000276585 850 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL9A1P20849 BAK1P1-201ENST00000317045 636 ntBASIC15.67■□□□□ 0.1
COL9A1P20849 TNNT2-204ENST00000367317 1050 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
COL9A1P20849 TNNT2-209ENST00000421663 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL9A1P20849 AL645933.1-201ENST00000440087 609 ntBASIC15.67■□□□□ 0.1
COL9A1P20849 AL365275.1-201ENST00000518570 471 ntTSL 2 BASIC15.67■□□□□ 0.1
COL9A1P20849 HTR4-207ENST00000520514 1236 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
COL9A1P20849 FAM86B3P-203ENST00000523992 854 ntBASIC15.67■□□□□ 0.1
COL9A1P20849 AL160314.3-201ENST00000556041 767 ntBASIC15.67■□□□□ 0.1
COL9A1P20849 EXOSC5-204ENST00000596905 826 ntTSL 2 BASIC15.67■□□□□ 0.1
COL9A1P20849 HCG18-241ENST00000602290 821 ntTSL 2 BASIC15.67■□□□□ 0.1
COL9A1P20849 AL078590.3-205ENST00000606039 465 ntTSL 5 BASIC15.67■□□□□ 0.1
COL9A1P20849 AC068631.1-255ENST00000608173 588 ntTSL 5 BASIC15.67■□□□□ 0.1
COL9A1P20849 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC15.67■□□□□ 0.1
COL9A1P20849 MAP3K14-205ENST00000617331 1049 ntTSL 5 BASIC15.67■□□□□ 0.1
COL9A1P20849 AC105137.3-201ENST00000617588 984 ntBASIC15.67■□□□□ 0.1
COL9A1P20849 AC068587.8-201ENST00000641239 219 ntBASIC15.67■□□□□ 0.1
COL9A1P20849 PCDHA14-201ENST00000506751 2298 ntBASIC15.67■□□□□ 0.1
COL9A1P20849 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
COL9A1P20849 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL9A1P20849 LINC02021-201ENST00000504808 1608 ntTSL 3 BASIC15.67■□□□□ 0.1
COL9A1P20849 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL9A1P20849 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
COL9A1P20849 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC15.67■□□□□ 0.1
COL9A1P20849 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC15.67■□□□□ 0.1
COL9A1P20849 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC15.67■□□□□ 0.1
COL9A1P20849 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL9A1P20849 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
COL9A1P20849 SIGLEC20P-201ENST00000595243 1311 ntBASIC15.67■□□□□ 0.1
COL9A1P20849 AL138799.1-201ENST00000448213 1675 ntBASIC15.67■□□□□ 0.1
COL9A1P20849 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL9A1P20849 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL9A1P20849 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC15.66■□□□□ 0.1
COL9A1P20849 GPN3-201ENST00000228827 1468 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL9A1P20849 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL9A1P20849 PRPF18-202ENST00000378572 1717 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL9A1P20849 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC15.66■□□□□ 0.1
COL9A1P20849 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC15.66■□□□□ 0.1
COL9A1P20849 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
COL9A1P20849 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC15.66■□□□□ 0.1
COL9A1P20849 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL9A1P20849 C11orf49-203ENST00000378618 1166 ntTSL 5 BASIC15.66■□□□□ 0.1
COL9A1P20849 Z69890.1-201ENST00000382990 339 ntBASIC15.66■□□□□ 0.1
COL9A1P20849 PLAC9P1-201ENST00000397540 389 ntTSL 2 BASIC15.66■□□□□ 0.1
COL9A1P20849 SUN1-204ENST00000403868 978 ntTSL 2 BASIC15.66■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms