Protein–RNA interactions for Protein: P04233

CD74, HLA class II histocompatibility antigen gamma chain, humanhuman

Predictions only

Length 296 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CD74P04233 CREB3L4-202ENST00000368600 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
CD74P04233 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC12.97□□□□□ -0.33
CD74P04233 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC12.97□□□□□ -0.33
CD74P04233 ARHGEF1-202ENST00000347545 3091 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
CD74P04233 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CD74P04233 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
CD74P04233 AC089987.1-201ENST00000551654 2209 ntBASIC12.97□□□□□ -0.33
CD74P04233 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC12.97□□□□□ -0.33
CD74P04233 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CD74P04233 RDX-218ENST00000544551 4117 ntTSL 2 BASIC12.97□□□□□ -0.33
CD74P04233 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
CD74P04233 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CD74P04233 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC12.97□□□□□ -0.33
CD74P04233 AC023090.2-201ENST00000625182 2110 ntBASIC12.97□□□□□ -0.33
CD74P04233 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
CD74P04233 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
CD74P04233 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC12.97□□□□□ -0.33
CD74P04233 AKAP8P1-201ENST00000434743 1349 ntBASIC12.97□□□□□ -0.33
CD74P04233 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC12.97□□□□□ -0.33
CD74P04233 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC12.97□□□□□ -0.33
CD74P04233 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC12.97□□□□□ -0.33
CD74P04233 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
CD74P04233 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
CD74P04233 SMTN-202ENST00000347557 3130 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
CD74P04233 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
CD74P04233 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC12.97□□□□□ -0.33
CD74P04233 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CD74P04233 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC12.97□□□□□ -0.33
CD74P04233 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
CD74P04233 HLA-H-201ENST00000383620 1096 ntBASIC12.97□□□□□ -0.33
CD74P04233 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC12.97□□□□□ -0.33
CD74P04233 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC12.97□□□□□ -0.33
CD74P04233 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC12.97□□□□□ -0.33
CD74P04233 KRT19P2-202ENST00000557173 1012 ntBASIC12.97□□□□□ -0.33
CD74P04233 AC027307.2-201ENST00000591252 911 ntBASIC12.97□□□□□ -0.33
CD74P04233 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC12.97□□□□□ -0.33
CD74P04233 AC068137.2-201ENST00000605408 478 ntBASIC12.97□□□□□ -0.33
CD74P04233 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC12.97□□□□□ -0.33
CD74P04233 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC12.97□□□□□ -0.33
CD74P04233 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC12.97□□□□□ -0.33
CD74P04233 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC12.97□□□□□ -0.33
CD74P04233 ZNF133-203ENST00000377671 2701 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
CD74P04233 DBN1-203ENST00000393565 2701 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
CD74P04233 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CD74P04233 TMUB2-202ENST00000357984 1921 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
CD74P04233 CDCA3-207ENST00000538862 1943 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CD74P04233 MBD1-201ENST00000269468 3259 ntAPPRIS P3 TSL 5 BASIC12.97□□□□□ -0.33
CD74P04233 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CD74P04233 SIMC1-205ENST00000443967 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
CD74P04233 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CD74P04233 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CD74P04233 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC12.97□□□□□ -0.33
CD74P04233 NEAT1-201ENST00000499732 1811 ntTSL 2 BASIC12.97□□□□□ -0.33
CD74P04233 ZBTB45P1-201ENST00000452761 1456 ntBASIC12.97□□□□□ -0.33
CD74P04233 ZNF607-201ENST00000355202 4364 ntAPPRIS P3 TSL 2 BASIC12.97□□□□□ -0.33
CD74P04233 IKBKB-217ENST00000520810 3086 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CD74P04233 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
CD74P04233 PEX5L-215ENST00000485199 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
CD74P04233 TIE1-201ENST00000372476 3882 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CD74P04233 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CD74P04233 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC12.96□□□□□ -0.33
CD74P04233 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC12.96□□□□□ -0.33
CD74P04233 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC12.96□□□□□ -0.33
CD74P04233 ZNF576-201ENST00000336564 2566 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CD74P04233 LRIG3-201ENST00000320743 4070 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CD74P04233 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CD74P04233 FBXL16-201ENST00000324361 3411 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CD74P04233 NFKB2-204ENST00000428099 3416 ntAPPRIS ALT1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CD74P04233 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.33
CD74P04233 REM2-202ENST00000536884 1331 ntTSL 2 BASIC12.96□□□□□ -0.33
CD74P04233 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CD74P04233 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC12.96□□□□□ -0.33
CD74P04233 RUNX1T1-251ENST00000615601 7372 ntAPPRIS ALT1 TSL 5 BASIC12.96□□□□□ -0.33
CD74P04233 RBM47-203ENST00000381795 4473 ntAPPRIS P3 TSL 2 BASIC12.96□□□□□ -0.33
CD74P04233 PPP5D1-201ENST00000414155 1882 ntAPPRIS P5 TSL 2 BASIC12.96□□□□□ -0.33
CD74P04233 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CD74P04233 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CD74P04233 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC12.96□□□□□ -0.33
CD74P04233 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC12.96□□□□□ -0.33
CD74P04233 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CD74P04233 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC12.96□□□□□ -0.33
CD74P04233 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC12.96□□□□□ -0.33
CD74P04233 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC12.96□□□□□ -0.33
CD74P04233 KRT18P56-201ENST00000507275 550 ntBASIC12.96□□□□□ -0.33
CD74P04233 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC12.96□□□□□ -0.33
CD74P04233 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
CD74P04233 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC12.96□□□□□ -0.33
CD74P04233 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC12.96□□□□□ -0.33
CD74P04233 AP002472.1-201ENST00000577490 586 ntBASIC12.96□□□□□ -0.33
CD74P04233 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC12.96□□□□□ -0.33
CD74P04233 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
CD74P04233 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC12.96□□□□□ -0.33
CD74P04233 CASC2-202ENST00000426021 3232 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
CD74P04233 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
CD74P04233 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CD74P04233 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC12.96□□□□□ -0.34
CD74P04233 IGDCC3-201ENST00000327987 4479 ntAPPRIS P2 TSL 1 (best) BASIC12.96□□□□□ -0.34
CD74P04233 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC12.96□□□□□ -0.34
CD74P04233 CARHSP1-220ENST00000619881 2849 ntAPPRIS P1 TSL 3 BASIC12.96□□□□□ -0.34
CD74P04233 ABCA7-201ENST00000263094 6816 ntAPPRIS P2 TSL 5 BASIC12.96□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 48.4 ms