Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC9.28□□□□□ -0.92
APOBP04114 AC136624.2-201ENST00000574883 542 ntTSL 3 BASIC9.28□□□□□ -0.92
APOBP04114 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC9.28□□□□□ -0.92
APOBP04114 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC9.28□□□□□ -0.92
APOBP04114 LTF-202ENST00000417439 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC9.28□□□□□ -0.92
APOBP04114 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC9.28□□□□□ -0.92
APOBP04114 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC9.28□□□□□ -0.92
APOBP04114 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC9.28□□□□□ -0.92
APOBP04114 LINC00665-205ENST00000585356 1557 ntTSL 2 BASIC9.28□□□□□ -0.92
APOBP04114 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC9.28□□□□□ -0.92
APOBP04114 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC9.28□□□□□ -0.92
APOBP04114 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC9.28□□□□□ -0.92
APOBP04114 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC9.28□□□□□ -0.92
APOBP04114 SGCE-204ENST00000428696 1409 ntTSL 1 (best) BASIC9.28□□□□□ -0.92
APOBP04114 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC9.28□□□□□ -0.92
APOBP04114 PLAC8L1-201ENST00000311450 638 ntAPPRIS P1 TSL 1 (best) BASIC9.28□□□□□ -0.92
APOBP04114 MIR566-201ENST00000385187 94 ntBASIC9.28□□□□□ -0.92
APOBP04114 AL807761.2-201ENST00000422849 729 ntBASIC9.28□□□□□ -0.92
APOBP04114 DMKN-256ENST00000492341 738 ntAPPRIS ALT2 TSL 2 BASIC9.28□□□□□ -0.92
APOBP04114 AC005845.1-201ENST00000539206 653 ntTSL 3 BASIC9.28□□□□□ -0.92
APOBP04114 AC090001.1-201ENST00000553194 467 ntTSL 3 BASIC9.28□□□□□ -0.92
APOBP04114 IQSEC2-207ENST00000638583 722 ntTSL 5 BASIC9.28□□□□□ -0.92
APOBP04114 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC9.28□□□□□ -0.92
APOBP04114 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC9.28□□□□□ -0.92
APOBP04114 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC9.28□□□□□ -0.92
APOBP04114 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC9.28□□□□□ -0.92
APOBP04114 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC9.28□□□□□ -0.92
APOBP04114 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC9.28□□□□□ -0.92
APOBP04114 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC9.28□□□□□ -0.92
APOBP04114 SNX15-201ENST00000352068 771 ntTSL 5 BASIC9.28□□□□□ -0.92
APOBP04114 XPNPEP2-201ENST00000371105 912 ntTSL 2 BASIC9.28□□□□□ -0.92
APOBP04114 AL139420.2-201ENST00000449439 410 ntTSL 3 BASIC9.28□□□□□ -0.92
APOBP04114 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC9.28□□□□□ -0.92
APOBP04114 KLHDC8A-203ENST00000460687 1022 ntTSL 5 BASIC9.28□□□□□ -0.92
APOBP04114 AC022858.1-202ENST00000521084 393 ntTSL 3 BASIC9.28□□□□□ -0.92
APOBP04114 TXNDC17-208ENST00000574838 746 ntTSL 3 BASIC9.28□□□□□ -0.92
APOBP04114 AC027601.3-201ENST00000622907 509 ntBASIC9.28□□□□□ -0.92
APOBP04114 ZBTB45P1-201ENST00000452761 1456 ntBASIC9.28□□□□□ -0.92
APOBP04114 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC9.28□□□□□ -0.92
APOBP04114 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC9.28□□□□□ -0.92
APOBP04114 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC9.28□□□□□ -0.92
APOBP04114 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC9.28□□□□□ -0.92
APOBP04114 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC9.28□□□□□ -0.92
APOBP04114 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC9.28□□□□□ -0.92
APOBP04114 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC9.28□□□□□ -0.92
APOBP04114 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC9.27□□□□□ -0.92
APOBP04114 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC9.27□□□□□ -0.92
APOBP04114 AC113391.2-201ENST00000512245 553 ntTSL 4 BASIC9.27□□□□□ -0.92
APOBP04114 ANAPC15-204ENST00000535234 848 ntAPPRIS P3 TSL 2 BASIC9.27□□□□□ -0.92
APOBP04114 AC004686.1-201ENST00000605113 538 ntBASIC9.27□□□□□ -0.92
APOBP04114 PTPN20CP-201ENST00000614090 920 ntBASIC9.27□□□□□ -0.92
APOBP04114 AC092299.1-201ENST00000632679 757 ntBASIC9.27□□□□□ -0.92
APOBP04114 AC004706.3-207ENST00000634823 977 ntTSL 5 BASIC9.27□□□□□ -0.92
APOBP04114 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC9.27□□□□□ -0.92
APOBP04114 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC9.27□□□□□ -0.92
APOBP04114 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC9.27□□□□□ -0.92
APOBP04114 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC9.27□□□□□ -0.92
APOBP04114 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC9.27□□□□□ -0.93
APOBP04114 ERCC1-208ENST00000589165 1453 ntAPPRIS P1 TSL 5 BASIC9.27□□□□□ -0.93
APOBP04114 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC9.27□□□□□ -0.93
APOBP04114 PROK2-201ENST00000295619 1022 ntTSL 1 (best) BASIC9.27□□□□□ -0.93
APOBP04114 LCE3B-201ENST00000335633 288 ntAPPRIS P1 BASIC9.27□□□□□ -0.93
APOBP04114 KRTAP2-4-201ENST00000394015 764 ntAPPRIS P1 BASIC9.27□□□□□ -0.93
APOBP04114 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC9.27□□□□□ -0.93
APOBP04114 CSNK1G2P1-201ENST00000442675 955 ntBASIC9.27□□□□□ -0.93
APOBP04114 APCDD1L-AS1-206ENST00000445984 566 ntTSL 3 BASIC9.27□□□□□ -0.93
APOBP04114 APCDD1L-AS1-208ENST00000448374 546 ntTSL 4 BASIC9.27□□□□□ -0.93
APOBP04114 LINC00313-207ENST00000451543 413 ntTSL 3 BASIC9.27□□□□□ -0.93
APOBP04114 AL355803.1-201ENST00000455524 188 ntTSL 2 BASIC9.27□□□□□ -0.93
APOBP04114 AP003398.1-201ENST00000531124 318 ntBASIC9.27□□□□□ -0.93
APOBP04114 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC9.27□□□□□ -0.93
APOBP04114 CCDC113-206ENST00000616795 891 ntTSL 5 BASIC9.27□□□□□ -0.93
APOBP04114 LINC01669-201ENST00000623161 413 ntTSL 3 BASIC9.27□□□□□ -0.93
APOBP04114 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC9.27□□□□□ -0.93
APOBP04114 AC024909.3-201ENST00000611513 2257 ntBASIC9.27□□□□□ -0.93
APOBP04114 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC9.27□□□□□ -0.93
APOBP04114 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC9.27□□□□□ -0.93
APOBP04114 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC9.27□□□□□ -0.93
APOBP04114 COQ3-201ENST00000254759 1335 ntAPPRIS P1 TSL 1 (best) BASIC9.27□□□□□ -0.93
APOBP04114 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC9.27□□□□□ -0.93
APOBP04114 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC9.27□□□□□ -0.93
APOBP04114 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC9.27□□□□□ -0.93
APOBP04114 PCDHA12-202ENST00000613593 2588 ntBASIC9.27□□□□□ -0.93
APOBP04114 VEGFA-201ENST00000230480 993 ntTSL 1 (best) BASIC9.27□□□□□ -0.93
APOBP04114 NHP2-202ENST00000314397 599 ntTSL 2 BASIC9.27□□□□□ -0.93
APOBP04114 JTB-202ENST00000356648 1040 ntTSL 2 BASIC9.27□□□□□ -0.93
APOBP04114 RPL10-202ENST00000369817 1284 ntAPPRIS P1 TSL 5 BASIC9.27□□□□□ -0.93
APOBP04114 HLA-DRB5-201ENST00000374975 1260 ntAPPRIS P1 BASIC9.27□□□□□ -0.93
APOBP04114 BX284668.5-201ENST00000422124 406 ntTSL 2 BASIC9.27□□□□□ -0.93
APOBP04114 LINC00866-201ENST00000427379 418 ntTSL 2 BASIC9.27□□□□□ -0.93
APOBP04114 GDNF-207ENST00000515058 764 ntTSL 5 BASIC9.27□□□□□ -0.93
APOBP04114 AC145207.3-201ENST00000576784 529 ntTSL 5 BASIC9.27□□□□□ -0.93
APOBP04114 AC010754.1-201ENST00000582300 1061 ntTSL 3 BASIC9.27□□□□□ -0.93
APOBP04114 AC242426.4-201ENST00000606856 573 ntTSL 5 BASIC9.27□□□□□ -0.93
APOBP04114 AMHR2-201ENST00000257863 1863 ntAPPRIS P3 TSL 1 (best) BASIC9.27□□□□□ -0.93
APOBP04114 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC9.27□□□□□ -0.93
APOBP04114 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC9.27□□□□□ -0.93
APOBP04114 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC9.27□□□□□ -0.93
APOBP04114 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC9.27□□□□□ -0.93
APOBP04114 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC9.27□□□□□ -0.93
Retrieved 100 of 98,524 protein–RNA pairs in 47.7 ms