Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC21.05■□□□□ 0.96
NPHP4O75161 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC21.05■□□□□ 0.96
NPHP4O75161 TMPRSS4-211ENST00000522307 1634 ntTSL 2 BASIC21.05■□□□□ 0.96
NPHP4O75161 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC21.05■□□□□ 0.96
NPHP4O75161 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
NPHP4O75161 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC21.05■□□□□ 0.96
NPHP4O75161 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
NPHP4O75161 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
NPHP4O75161 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
NPHP4O75161 CHRNA1-203ENST00000409219 1466 ntTSL 3 BASIC21.04■□□□□ 0.96
NPHP4O75161 GDPGP1-201ENST00000329600 1193 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
NPHP4O75161 AL354892.2-201ENST00000413088 403 ntTSL 5 BASIC21.04■□□□□ 0.96
NPHP4O75161 DCAF7-201ENST00000415273 1220 ntTSL 2 BASIC21.04■□□□□ 0.96
NPHP4O75161 AL512306.1-201ENST00000432698 848 ntBASIC21.04■□□□□ 0.96
NPHP4O75161 BX276092.5-201ENST00000439926 886 ntTSL 5 BASIC21.04■□□□□ 0.96
NPHP4O75161 RNA5SP417-201ENST00000516459 108 ntBASIC21.04■□□□□ 0.96
NPHP4O75161 AL365275.1-201ENST00000518570 471 ntTSL 2 BASIC21.04■□□□□ 0.96
NPHP4O75161 AC007952.4-201ENST00000573866 637 ntBASIC21.04■□□□□ 0.96
NPHP4O75161 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
NPHP4O75161 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
NPHP4O75161 TOMM22-201ENST00000216034 2040 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
NPHP4O75161 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC21.04■□□□□ 0.96
NPHP4O75161 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC21.04■□□□□ 0.96
NPHP4O75161 IL1F10-202ENST00000393197 1366 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
NPHP4O75161 ANXA8L1-202ENST00000611655 1398 ntTSL 2 BASIC21.04■□□□□ 0.96
NPHP4O75161 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC21.04■□□□□ 0.96
NPHP4O75161 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC21.04■□□□□ 0.96
NPHP4O75161 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
NPHP4O75161 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
NPHP4O75161 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC21.04■□□□□ 0.96
NPHP4O75161 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
NPHP4O75161 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
NPHP4O75161 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
NPHP4O75161 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
NPHP4O75161 PLAC9P1-201ENST00000397540 389 ntTSL 2 BASIC21.04■□□□□ 0.96
NPHP4O75161 PHACTR2-204ENST00000397980 745 ntTSL 3 BASIC21.04■□□□□ 0.96
NPHP4O75161 TMEM222-204ENST00000466759 368 ntTSL 3 BASIC21.04■□□□□ 0.96
NPHP4O75161 FXYD6-FXYD2-201ENST00000532984 670 ntTSL 3 BASIC21.04■□□□□ 0.96
NPHP4O75161 TREX1-206ENST00000629913 945 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
NPHP4O75161 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
NPHP4O75161 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
NPHP4O75161 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC21.03■□□□□ 0.96
NPHP4O75161 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC21.03■□□□□ 0.96
NPHP4O75161 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC21.03■□□□□ 0.96
NPHP4O75161 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
NPHP4O75161 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
NPHP4O75161 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC21.03■□□□□ 0.96
NPHP4O75161 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
NPHP4O75161 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
NPHP4O75161 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
NPHP4O75161 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
NPHP4O75161 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
NPHP4O75161 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC21.03■□□□□ 0.96
NPHP4O75161 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
NPHP4O75161 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC21.03■□□□□ 0.96
NPHP4O75161 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC21.03■□□□□ 0.96
NPHP4O75161 AC003102.2-201ENST00000589195 1469 ntBASIC21.03■□□□□ 0.96
NPHP4O75161 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC21.03■□□□□ 0.96
NPHP4O75161 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
NPHP4O75161 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
NPHP4O75161 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
NPHP4O75161 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC21.03■□□□□ 0.96
NPHP4O75161 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC21.03■□□□□ 0.96
NPHP4O75161 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
NPHP4O75161 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
NPHP4O75161 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
NPHP4O75161 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC21.03■□□□□ 0.96
NPHP4O75161 GTF3C6-201ENST00000329970 952 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
NPHP4O75161 TRBJ2-6-201ENST00000390418 53 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
NPHP4O75161 RAD51C-203ENST00000421782 567 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
NPHP4O75161 TXNRD2-206ENST00000462330 1129 ntTSL 3 BASIC21.03■□□□□ 0.96
NPHP4O75161 AC026191.1-204ENST00000517846 608 ntTSL 3 BASIC21.03■□□□□ 0.96
NPHP4O75161 AC109479.3-201ENST00000520163 360 ntTSL 3 BASIC21.03■□□□□ 0.96
NPHP4O75161 AC136624.2-201ENST00000574883 542 ntTSL 3 BASIC21.03■□□□□ 0.96
NPHP4O75161 AP000322.3-201ENST00000608665 388 ntBASIC21.03■□□□□ 0.96
NPHP4O75161 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
NPHP4O75161 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
NPHP4O75161 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC21.03■□□□□ 0.96
NPHP4O75161 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC21.03■□□□□ 0.96
NPHP4O75161 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
NPHP4O75161 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
NPHP4O75161 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC21.02■□□□□ 0.96
NPHP4O75161 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
NPHP4O75161 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC21.02■□□□□ 0.96
NPHP4O75161 ELP5-203ENST00000396627 1389 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
NPHP4O75161 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
NPHP4O75161 AC020763.4-201ENST00000623414 4170 ntBASIC21.02■□□□□ 0.96
NPHP4O75161 PES1-204ENST00000402284 2144 ntTSL 5 BASIC21.02■□□□□ 0.96
NPHP4O75161 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC21.02■□□□□ 0.96
NPHP4O75161 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
NPHP4O75161 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC21.02■□□□□ 0.96
NPHP4O75161 CCDC51-206ENST00000447018 1461 ntTSL 2 BASIC21.02■□□□□ 0.96
NPHP4O75161 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
NPHP4O75161 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC21.02■□□□□ 0.96
NPHP4O75161 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
NPHP4O75161 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC21.02■□□□□ 0.96
NPHP4O75161 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
NPHP4O75161 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
NPHP4O75161 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC21.02■□□□□ 0.96
NPHP4O75161 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms