Protein–RNA interactions for Protein: Q9Y696

CLIC4, Chloride intracellular channel protein 4, humanhuman

Predictions only

Length 253 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIC4Q9Y696 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC17.59■□□□□ 0.41
CLIC4Q9Y696 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
CLIC4Q9Y696 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CLIC4Q9Y696 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CLIC4Q9Y696 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
CLIC4Q9Y696 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CLIC4Q9Y696 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
CLIC4Q9Y696 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CLIC4Q9Y696 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
CLIC4Q9Y696 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
CLIC4Q9Y696 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CLIC4Q9Y696 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC17.58■□□□□ 0.41
CLIC4Q9Y696 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.41
CLIC4Q9Y696 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC17.58■□□□□ 0.41
CLIC4Q9Y696 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.41
CLIC4Q9Y696 MTHFR-210ENST00000641407 2387 ntBASIC17.58■□□□□ 0.41
CLIC4Q9Y696 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
CLIC4Q9Y696 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC17.58■□□□□ 0.41
CLIC4Q9Y696 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
CLIC4Q9Y696 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC17.58■□□□□ 0.4
CLIC4Q9Y696 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC17.58■□□□□ 0.4
CLIC4Q9Y696 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
CLIC4Q9Y696 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CLIC4Q9Y696 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
CLIC4Q9Y696 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC17.58■□□□□ 0.4
CLIC4Q9Y696 SYS1-203ENST00000414310 795 ntTSL 3 BASIC17.58■□□□□ 0.4
CLIC4Q9Y696 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC17.58■□□□□ 0.4
CLIC4Q9Y696 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC17.58■□□□□ 0.4
CLIC4Q9Y696 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC17.58■□□□□ 0.4
CLIC4Q9Y696 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC17.58■□□□□ 0.4
CLIC4Q9Y696 AL390955.2-201ENST00000603032 514 ntBASIC17.58■□□□□ 0.4
CLIC4Q9Y696 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC17.58■□□□□ 0.4
CLIC4Q9Y696 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CLIC4Q9Y696 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
CLIC4Q9Y696 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
CLIC4Q9Y696 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CLIC4Q9Y696 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
CLIC4Q9Y696 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
CLIC4Q9Y696 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC17.58■□□□□ 0.4
CLIC4Q9Y696 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CLIC4Q9Y696 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
CLIC4Q9Y696 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC17.58■□□□□ 0.4
CLIC4Q9Y696 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
CLIC4Q9Y696 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC17.58■□□□□ 0.4
CLIC4Q9Y696 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC17.58■□□□□ 0.4
CLIC4Q9Y696 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CLIC4Q9Y696 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
CLIC4Q9Y696 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
CLIC4Q9Y696 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CLIC4Q9Y696 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC17.57■□□□□ 0.4
CLIC4Q9Y696 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CLIC4Q9Y696 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CLIC4Q9Y696 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CLIC4Q9Y696 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC17.57■□□□□ 0.4
CLIC4Q9Y696 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC17.57■□□□□ 0.4
CLIC4Q9Y696 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CLIC4Q9Y696 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
CLIC4Q9Y696 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC17.57■□□□□ 0.4
CLIC4Q9Y696 AC055876.3-201ENST00000431496 288 ntBASIC17.57■□□□□ 0.4
CLIC4Q9Y696 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC17.57■□□□□ 0.4
CLIC4Q9Y696 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC17.57■□□□□ 0.4
CLIC4Q9Y696 AC004890.2-204ENST00000481968 304 ntBASIC17.57■□□□□ 0.4
CLIC4Q9Y696 MEIS3P1-201ENST00000495167 958 ntBASIC17.57■□□□□ 0.4
CLIC4Q9Y696 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
CLIC4Q9Y696 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CLIC4Q9Y696 AC138649.4-201ENST00000612222 287 ntBASIC17.57■□□□□ 0.4
CLIC4Q9Y696 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC17.57■□□□□ 0.4
CLIC4Q9Y696 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
CLIC4Q9Y696 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
CLIC4Q9Y696 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC17.57■□□□□ 0.4
CLIC4Q9Y696 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC17.57■□□□□ 0.4
CLIC4Q9Y696 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
CLIC4Q9Y696 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC17.57■□□□□ 0.4
CLIC4Q9Y696 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
CLIC4Q9Y696 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CLIC4Q9Y696 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CLIC4Q9Y696 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CLIC4Q9Y696 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC17.57■□□□□ 0.4
CLIC4Q9Y696 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CLIC4Q9Y696 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CLIC4Q9Y696 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC17.57■□□□□ 0.4
CLIC4Q9Y696 SF1-209ENST00000433274 2317 ntTSL 2 BASIC17.56■□□□□ 0.4
CLIC4Q9Y696 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC17.56■□□□□ 0.4
CLIC4Q9Y696 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC17.56■□□□□ 0.4
CLIC4Q9Y696 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
CLIC4Q9Y696 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CLIC4Q9Y696 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CLIC4Q9Y696 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
CLIC4Q9Y696 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CLIC4Q9Y696 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CLIC4Q9Y696 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
CLIC4Q9Y696 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC17.56■□□□□ 0.4
CLIC4Q9Y696 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CLIC4Q9Y696 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
CLIC4Q9Y696 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CLIC4Q9Y696 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CLIC4Q9Y696 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CLIC4Q9Y696 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
CLIC4Q9Y696 PKIG-203ENST00000372887 769 ntTSL 3 BASIC17.56■□□□□ 0.4
CLIC4Q9Y696 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms