Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC13.69□□□□□ -0.22
CLCF1Q9UBD9 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC13.69□□□□□ -0.22
CLCF1Q9UBD9 SAMD11P1-201ENST00000571429 661 ntBASIC13.69□□□□□ -0.22
CLCF1Q9UBD9 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC13.69□□□□□ -0.22
CLCF1Q9UBD9 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC13.69□□□□□ -0.22
CLCF1Q9UBD9 LARP4-220ENST00000615080 856 ntTSL 5 BASIC13.69□□□□□ -0.22
CLCF1Q9UBD9 AC145423.3-201ENST00000615987 467 ntBASIC13.69□□□□□ -0.22
CLCF1Q9UBD9 RHOXF1P1-202ENST00000635473 501 ntBASIC13.69□□□□□ -0.22
CLCF1Q9UBD9 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC13.69□□□□□ -0.22
CLCF1Q9UBD9 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
CLCF1Q9UBD9 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CLCF1Q9UBD9 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC13.69□□□□□ -0.22
CLCF1Q9UBD9 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC13.69□□□□□ -0.22
CLCF1Q9UBD9 PRAL-201ENST00000624952 3286 ntBASIC13.69□□□□□ -0.22
CLCF1Q9UBD9 LHFPL2-207ENST00000515007 4680 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CLCF1Q9UBD9 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CLCF1Q9UBD9 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CLCF1Q9UBD9 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CLCF1Q9UBD9 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
CLCF1Q9UBD9 AL138709.1-201ENST00000614840 1693 ntBASIC13.69□□□□□ -0.22
CLCF1Q9UBD9 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CLCF1Q9UBD9 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
CLCF1Q9UBD9 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
CLCF1Q9UBD9 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CLCF1Q9UBD9 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC13.68□□□□□ -0.22
CLCF1Q9UBD9 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CLCF1Q9UBD9 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CLCF1Q9UBD9 EFCAB2-202ENST00000366522 6167 ntTSL 2 BASIC13.68□□□□□ -0.22
CLCF1Q9UBD9 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
CLCF1Q9UBD9 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
CLCF1Q9UBD9 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CLCF1Q9UBD9 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CLCF1Q9UBD9 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
CLCF1Q9UBD9 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC13.68□□□□□ -0.22
CLCF1Q9UBD9 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
CLCF1Q9UBD9 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC13.68□□□□□ -0.22
CLCF1Q9UBD9 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
CLCF1Q9UBD9 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CLCF1Q9UBD9 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CLCF1Q9UBD9 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CLCF1Q9UBD9 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CLCF1Q9UBD9 B9D1-203ENST00000395615 805 ntTSL 3 BASIC13.68□□□□□ -0.22
CLCF1Q9UBD9 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC13.68□□□□□ -0.22
CLCF1Q9UBD9 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
CLCF1Q9UBD9 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC13.68□□□□□ -0.22
CLCF1Q9UBD9 CNN2P8-201ENST00000421872 913 ntBASIC13.68□□□□□ -0.22
CLCF1Q9UBD9 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
CLCF1Q9UBD9 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
CLCF1Q9UBD9 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC13.68□□□□□ -0.22
CLCF1Q9UBD9 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CLCF1Q9UBD9 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC13.68□□□□□ -0.22
CLCF1Q9UBD9 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC13.68□□□□□ -0.22
CLCF1Q9UBD9 AL033527.4-201ENST00000641026 673 ntBASIC13.68□□□□□ -0.22
CLCF1Q9UBD9 MYB-242ENST00000618728 3545 ntTSL 5 BASIC13.68□□□□□ -0.22
CLCF1Q9UBD9 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
CLCF1Q9UBD9 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC13.68□□□□□ -0.22
CLCF1Q9UBD9 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
CLCF1Q9UBD9 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC13.68□□□□□ -0.22
CLCF1Q9UBD9 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
CLCF1Q9UBD9 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
CLCF1Q9UBD9 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
CLCF1Q9UBD9 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CLCF1Q9UBD9 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
CLCF1Q9UBD9 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CLCF1Q9UBD9 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CLCF1Q9UBD9 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC13.68□□□□□ -0.22
CLCF1Q9UBD9 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC13.68□□□□□ -0.22
CLCF1Q9UBD9 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CLCF1Q9UBD9 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC13.68□□□□□ -0.22
CLCF1Q9UBD9 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CLCF1Q9UBD9 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
CLCF1Q9UBD9 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC13.67□□□□□ -0.22
CLCF1Q9UBD9 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC13.67□□□□□ -0.22
CLCF1Q9UBD9 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC13.67□□□□□ -0.22
CLCF1Q9UBD9 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CLCF1Q9UBD9 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CLCF1Q9UBD9 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CLCF1Q9UBD9 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CLCF1Q9UBD9 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CLCF1Q9UBD9 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CLCF1Q9UBD9 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
CLCF1Q9UBD9 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CLCF1Q9UBD9 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CLCF1Q9UBD9 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CLCF1Q9UBD9 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CLCF1Q9UBD9 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC13.67□□□□□ -0.22
CLCF1Q9UBD9 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CLCF1Q9UBD9 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC13.67□□□□□ -0.22
CLCF1Q9UBD9 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC13.67□□□□□ -0.22
CLCF1Q9UBD9 HYMAI-201ENST00000635591 3347 ntBASIC13.67□□□□□ -0.22
CLCF1Q9UBD9 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CLCF1Q9UBD9 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CLCF1Q9UBD9 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
CLCF1Q9UBD9 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CLCF1Q9UBD9 AC104457.1-201ENST00000401024 814 ntBASIC13.67□□□□□ -0.22
CLCF1Q9UBD9 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC13.67□□□□□ -0.22
CLCF1Q9UBD9 AL139094.1-201ENST00000405549 1188 ntBASIC13.67□□□□□ -0.22
CLCF1Q9UBD9 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CLCF1Q9UBD9 HLA-V-201ENST00000429037 534 ntBASIC13.67□□□□□ -0.22
CLCF1Q9UBD9 CSF2RBP1-201ENST00000447905 391 ntBASIC13.67□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 68.2 ms