Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC15.45■□□□□ 0.06
TM9SF3Q9HD45 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
TM9SF3Q9HD45 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC15.45■□□□□ 0.06
TM9SF3Q9HD45 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
TM9SF3Q9HD45 AC112504.1-201ENST00000623415 1841 ntBASIC15.45■□□□□ 0.06
TM9SF3Q9HD45 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
TM9SF3Q9HD45 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
TM9SF3Q9HD45 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
TM9SF3Q9HD45 LINC02447-202ENST00000501888 2146 ntBASIC15.44■□□□□ 0.06
TM9SF3Q9HD45 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC15.44■□□□□ 0.06
TM9SF3Q9HD45 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
TM9SF3Q9HD45 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
TM9SF3Q9HD45 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
TM9SF3Q9HD45 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
TM9SF3Q9HD45 DBET-201ENST00000630918 3363 ntBASIC15.44■□□□□ 0.06
TM9SF3Q9HD45 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC15.44■□□□□ 0.06
TM9SF3Q9HD45 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC15.44■□□□□ 0.06
TM9SF3Q9HD45 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
TM9SF3Q9HD45 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC15.44■□□□□ 0.06
TM9SF3Q9HD45 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC15.44■□□□□ 0.06
TM9SF3Q9HD45 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC15.44■□□□□ 0.06
TM9SF3Q9HD45 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
TM9SF3Q9HD45 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC15.44■□□□□ 0.06
TM9SF3Q9HD45 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC15.44■□□□□ 0.06
TM9SF3Q9HD45 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
TM9SF3Q9HD45 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC15.44■□□□□ 0.06
TM9SF3Q9HD45 MIR648-201ENST00000385046 94 ntBASIC15.44■□□□□ 0.06
TM9SF3Q9HD45 AL133267.1-201ENST00000398220 340 ntBASIC15.44■□□□□ 0.06
TM9SF3Q9HD45 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
TM9SF3Q9HD45 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC15.44■□□□□ 0.06
TM9SF3Q9HD45 RPL13AP20-201ENST00000459725 609 ntBASIC15.44■□□□□ 0.06
TM9SF3Q9HD45 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
TM9SF3Q9HD45 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC15.44■□□□□ 0.06
TM9SF3Q9HD45 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC15.44■□□□□ 0.06
TM9SF3Q9HD45 AC046168.2-201ENST00000560590 875 ntTSL 3 BASIC15.44■□□□□ 0.06
TM9SF3Q9HD45 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
TM9SF3Q9HD45 DERL2-202ENST00000570848 657 ntTSL 5 BASIC15.44■□□□□ 0.06
TM9SF3Q9HD45 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC15.44■□□□□ 0.06
TM9SF3Q9HD45 AC015910.1-201ENST00000579400 975 ntBASIC15.44■□□□□ 0.06
TM9SF3Q9HD45 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
TM9SF3Q9HD45 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC15.44■□□□□ 0.06
TM9SF3Q9HD45 LARP4-220ENST00000615080 856 ntTSL 5 BASIC15.44■□□□□ 0.06
TM9SF3Q9HD45 AC008687.7-202ENST00000637404 953 ntBASIC15.44■□□□□ 0.06
TM9SF3Q9HD45 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC15.44■□□□□ 0.06
TM9SF3Q9HD45 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC15.44■□□□□ 0.06
TM9SF3Q9HD45 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
TM9SF3Q9HD45 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC15.44■□□□□ 0.06
TM9SF3Q9HD45 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
TM9SF3Q9HD45 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
TM9SF3Q9HD45 ACE-203ENST00000413513 2237 ntTSL 2 BASIC15.44■□□□□ 0.06
TM9SF3Q9HD45 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC15.44■□□□□ 0.06
TM9SF3Q9HD45 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC15.44■□□□□ 0.06
TM9SF3Q9HD45 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
TM9SF3Q9HD45 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC15.44■□□□□ 0.06
TM9SF3Q9HD45 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC15.43■□□□□ 0.06
TM9SF3Q9HD45 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
TM9SF3Q9HD45 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
TM9SF3Q9HD45 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
TM9SF3Q9HD45 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
TM9SF3Q9HD45 CASK-202ENST00000378158 3848 ntTSL 5 BASIC15.43■□□□□ 0.06
TM9SF3Q9HD45 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
TM9SF3Q9HD45 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC15.43■□□□□ 0.06
TM9SF3Q9HD45 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC15.43■□□□□ 0.06
TM9SF3Q9HD45 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
TM9SF3Q9HD45 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC15.43■□□□□ 0.06
TM9SF3Q9HD45 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC15.43■□□□□ 0.06
TM9SF3Q9HD45 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
TM9SF3Q9HD45 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC15.43■□□□□ 0.06
TM9SF3Q9HD45 AC245100.3-201ENST00000441281 285 ntBASIC15.43■□□□□ 0.06
TM9SF3Q9HD45 AC099548.2-209ENST00000480264 625 ntBASIC15.43■□□□□ 0.06
TM9SF3Q9HD45 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC15.43■□□□□ 0.06
TM9SF3Q9HD45 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC15.43■□□□□ 0.06
TM9SF3Q9HD45 RIT1-205ENST00000539040 919 ntTSL 2 BASIC15.43■□□□□ 0.06
TM9SF3Q9HD45 DUX4L45-201ENST00000566406 1057 ntBASIC15.43■□□□□ 0.06
TM9SF3Q9HD45 KSR1-207ENST00000578981 748 ntTSL 4 BASIC15.43■□□□□ 0.06
TM9SF3Q9HD45 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC15.43■□□□□ 0.06
TM9SF3Q9HD45 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC15.43■□□□□ 0.06
TM9SF3Q9HD45 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
TM9SF3Q9HD45 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC15.43■□□□□ 0.06
TM9SF3Q9HD45 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
TM9SF3Q9HD45 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
TM9SF3Q9HD45 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
TM9SF3Q9HD45 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
TM9SF3Q9HD45 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
TM9SF3Q9HD45 LINC02228-204ENST00000642115 2962 ntBASIC15.43■□□□□ 0.06
TM9SF3Q9HD45 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC15.43■□□□□ 0.06
TM9SF3Q9HD45 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
TM9SF3Q9HD45 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC15.43■□□□□ 0.06
TM9SF3Q9HD45 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC15.43■□□□□ 0.06
TM9SF3Q9HD45 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
TM9SF3Q9HD45 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
TM9SF3Q9HD45 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
TM9SF3Q9HD45 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
TM9SF3Q9HD45 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
TM9SF3Q9HD45 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
TM9SF3Q9HD45 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
TM9SF3Q9HD45 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
TM9SF3Q9HD45 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
TM9SF3Q9HD45 TPO-206ENST00000382269 1155 ntTSL 5 BASIC15.42■□□□□ 0.06
TM9SF3Q9HD45 BCYRN1-201ENST00000418539 200 ntBASIC15.42■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 53.9 ms