Protein–RNA interactions for Protein: P52948

NUP98, Nuclear pore complex protein Nup98-Nup96, humanhuman

Predictions only

Length 1,817 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98P52948 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
NUP98P52948 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
NUP98P52948 CYP4F23P-201ENST00000593402 1579 ntBASIC18.75■□□□□ 0.59
NUP98P52948 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
NUP98P52948 COLEC11-201ENST00000236693 1381 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
NUP98P52948 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
NUP98P52948 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC18.75■□□□□ 0.59
NUP98P52948 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC18.75■□□□□ 0.59
NUP98P52948 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC18.75■□□□□ 0.59
NUP98P52948 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
NUP98P52948 RHOXF1-201ENST00000217999 769 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
NUP98P52948 COX4I1-201ENST00000253452 708 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
NUP98P52948 EFCAB10-201ENST00000460135 717 ntTSL 2 BASIC18.74■□□□□ 0.59
NUP98P52948 RN7SL181P-201ENST00000462921 277 ntBASIC18.74■□□□□ 0.59
NUP98P52948 AC008406.1-201ENST00000509530 541 ntTSL 3 BASIC18.74■□□□□ 0.59
NUP98P52948 TP53AIP1-205ENST00000531399 806 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
NUP98P52948 AC117500.3-201ENST00000537032 666 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
NUP98P52948 MIR4722-201ENST00000578292 60 ntBASIC18.74■□□□□ 0.59
NUP98P52948 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
NUP98P52948 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
NUP98P52948 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC18.74■□□□□ 0.59
NUP98P52948 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC18.74■□□□□ 0.59
NUP98P52948 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC18.74■□□□□ 0.59
NUP98P52948 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC18.74■□□□□ 0.59
NUP98P52948 FAM45A-201ENST00000361432 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
NUP98P52948 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC18.74■□□□□ 0.59
NUP98P52948 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
NUP98P52948 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC18.74■□□□□ 0.59
NUP98P52948 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
NUP98P52948 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
NUP98P52948 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
NUP98P52948 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC18.74■□□□□ 0.59
NUP98P52948 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
NUP98P52948 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC18.74■□□□□ 0.59
NUP98P52948 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
NUP98P52948 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC18.74■□□□□ 0.59
NUP98P52948 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC18.74■□□□□ 0.59
NUP98P52948 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
NUP98P52948 TPT1-AS1-203ENST00000412946 744 ntTSL 3 BASIC18.74■□□□□ 0.59
NUP98P52948 AC104073.2-201ENST00000453737 312 ntBASIC18.74■□□□□ 0.59
NUP98P52948 PRKRA-211ENST00000487082 1211 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
NUP98P52948 TALDO1-203ENST00000528097 1231 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
NUP98P52948 SEC23A-204ENST00000548032 907 ntTSL 2 BASIC18.74■□□□□ 0.59
NUP98P52948 AC008763.2-203ENST00000595866 762 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
NUP98P52948 NEAT1-203ENST00000601801 487 ntTSL 4 BASIC18.74■□□□□ 0.59
NUP98P52948 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
NUP98P52948 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
NUP98P52948 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
NUP98P52948 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC18.74■□□□□ 0.59
NUP98P52948 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
NUP98P52948 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
NUP98P52948 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
NUP98P52948 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC18.74■□□□□ 0.59
NUP98P52948 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
NUP98P52948 BRMS1-202ENST00000425825 1363 ntTSL 5 BASIC18.74■□□□□ 0.59
NUP98P52948 SNHG1-213ENST00000540725 1374 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
NUP98P52948 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
NUP98P52948 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC18.73■□□□□ 0.59
NUP98P52948 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC18.73■□□□□ 0.59
NUP98P52948 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
NUP98P52948 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
NUP98P52948 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC18.73■□□□□ 0.59
NUP98P52948 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC18.73■□□□□ 0.59
NUP98P52948 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
NUP98P52948 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
NUP98P52948 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
NUP98P52948 SLCO6A1-207ENST00000513675 1611 ntTSL 2 BASIC18.73■□□□□ 0.59
NUP98P52948 ZDHHC4-201ENST00000335965 1259 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
NUP98P52948 PRTFDC1-202ENST00000376376 741 ntTSL 2 BASIC18.73■□□□□ 0.59
NUP98P52948 APRT-201ENST00000378364 947 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
NUP98P52948 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC18.73■□□□□ 0.59
NUP98P52948 STUB1-204ENST00000564370 875 ntTSL 2 BASIC18.73■□□□□ 0.59
NUP98P52948 AC005901.1-201ENST00000592766 552 ntTSL 4 BASIC18.73■□□□□ 0.59
NUP98P52948 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC18.73■□□□□ 0.59
NUP98P52948 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
NUP98P52948 TMEM106A-202ENST00000541594 1330 ntTSL 2 BASIC18.73■□□□□ 0.59
NUP98P52948 AIRN-201ENST00000601203 4374 ntBASIC18.73■□□□□ 0.59
NUP98P52948 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC18.73■□□□□ 0.59
NUP98P52948 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC18.73■□□□□ 0.59
NUP98P52948 CKMT1B-201ENST00000300283 1779 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
NUP98P52948 CKMT1A-204ENST00000434505 1779 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
NUP98P52948 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
NUP98P52948 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
NUP98P52948 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC18.73■□□□□ 0.59
NUP98P52948 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
NUP98P52948 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
NUP98P52948 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
NUP98P52948 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC18.72■□□□□ 0.59
NUP98P52948 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
NUP98P52948 UBE4B-203ENST00000377153 1273 ntTSL 3 BASIC18.72■□□□□ 0.59
NUP98P52948 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
NUP98P52948 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
NUP98P52948 AC011742.3-201ENST00000439053 820 ntBASIC18.72■□□□□ 0.59
NUP98P52948 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC18.72■□□□□ 0.59
NUP98P52948 AC100827.2-201ENST00000563214 1194 ntBASIC18.72■□□□□ 0.59
NUP98P52948 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC18.72■□□□□ 0.59
NUP98P52948 SIRT2-219ENST00000613542 1170 ntTSL 5 BASIC18.72■□□□□ 0.59
NUP98P52948 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
NUP98P52948 ID2-203ENST00000396290 1362 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
NUP98P52948 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 49.1 ms