Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC14.58□□□□□ -0.08
SOX3P41225 AC027307.3-201ENST00000594262 1100 ntBASIC14.58□□□□□ -0.08
SOX3P41225 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
SOX3P41225 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC14.58□□□□□ -0.08
SOX3P41225 POR-201ENST00000394893 2532 ntTSL 5 BASIC14.58□□□□□ -0.08
SOX3P41225 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
SOX3P41225 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC14.58□□□□□ -0.08
SOX3P41225 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC14.58□□□□□ -0.08
SOX3P41225 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
SOX3P41225 SLC7A15P-201ENST00000424028 1363 ntBASIC14.58□□□□□ -0.08
SOX3P41225 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SOX3P41225 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SOX3P41225 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC14.58□□□□□ -0.08
SOX3P41225 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC14.58□□□□□ -0.08
SOX3P41225 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
SOX3P41225 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SOX3P41225 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SOX3P41225 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
SOX3P41225 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
SOX3P41225 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
SOX3P41225 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
SOX3P41225 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SOX3P41225 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
SOX3P41225 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC14.57□□□□□ -0.08
SOX3P41225 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SOX3P41225 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SOX3P41225 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC14.57□□□□□ -0.08
SOX3P41225 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC14.57□□□□□ -0.08
SOX3P41225 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SOX3P41225 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
SOX3P41225 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC14.57□□□□□ -0.08
SOX3P41225 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
SOX3P41225 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SOX3P41225 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC14.57□□□□□ -0.08
SOX3P41225 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
SOX3P41225 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SOX3P41225 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
SOX3P41225 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
SOX3P41225 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC14.57□□□□□ -0.08
SOX3P41225 AC087499.6-201ENST00000411576 835 ntBASIC14.57□□□□□ -0.08
SOX3P41225 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC14.57□□□□□ -0.08
SOX3P41225 PNKD-204ENST00000436005 978 ntTSL 5 BASIC14.57□□□□□ -0.08
SOX3P41225 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC14.57□□□□□ -0.08
SOX3P41225 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
SOX3P41225 MEIS3P1-201ENST00000495167 958 ntBASIC14.57□□□□□ -0.08
SOX3P41225 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
SOX3P41225 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC14.57□□□□□ -0.08
SOX3P41225 AP005018.1-201ENST00000525475 301 ntBASIC14.57□□□□□ -0.08
SOX3P41225 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC14.57□□□□□ -0.08
SOX3P41225 COQ6-210ENST00000554920 649 ntTSL 3 BASIC14.57□□□□□ -0.08
SOX3P41225 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
SOX3P41225 AC140912.1-201ENST00000577171 1054 ntBASIC14.57□□□□□ -0.08
SOX3P41225 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC14.57□□□□□ -0.08
SOX3P41225 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC14.57□□□□□ -0.08
SOX3P41225 AC097359.3-201ENST00000603982 1210 ntBASIC14.57□□□□□ -0.08
SOX3P41225 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
SOX3P41225 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC14.57□□□□□ -0.08
SOX3P41225 AC025048.6-201ENST00000634326 1161 ntBASIC14.57□□□□□ -0.08
SOX3P41225 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SOX3P41225 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
SOX3P41225 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
SOX3P41225 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
SOX3P41225 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
SOX3P41225 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC14.57□□□□□ -0.08
SOX3P41225 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC14.57□□□□□ -0.08
SOX3P41225 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SOX3P41225 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
SOX3P41225 AL391825.1-201ENST00000457671 1364 ntBASIC14.57□□□□□ -0.08
SOX3P41225 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
SOX3P41225 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
SOX3P41225 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC14.57□□□□□ -0.08
SOX3P41225 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SOX3P41225 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
SOX3P41225 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
SOX3P41225 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SOX3P41225 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC14.57□□□□□ -0.08
SOX3P41225 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC14.57□□□□□ -0.08
SOX3P41225 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC14.57□□□□□ -0.08
SOX3P41225 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SOX3P41225 AL359258.3-201ENST00000622910 2331 ntBASIC14.57□□□□□ -0.08
SOX3P41225 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC14.56□□□□□ -0.08
SOX3P41225 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC14.56□□□□□ -0.08
SOX3P41225 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
SOX3P41225 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
SOX3P41225 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC14.56□□□□□ -0.08
SOX3P41225 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC14.56□□□□□ -0.08
SOX3P41225 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SOX3P41225 AL607033.1-201ENST00000623900 1599 ntBASIC14.56□□□□□ -0.08
SOX3P41225 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
SOX3P41225 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SOX3P41225 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
SOX3P41225 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
SOX3P41225 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
SOX3P41225 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
SOX3P41225 COCH-203ENST00000460581 2688 ntTSL 2 BASIC14.56□□□□□ -0.08
SOX3P41225 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SOX3P41225 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
SOX3P41225 CICP23-201ENST00000605013 2741 ntBASIC14.56□□□□□ -0.08
SOX3P41225 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC14.56□□□□□ -0.08
SOX3P41225 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms