Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
TPM1P09493 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC17.08■□□□□ 0.32
TPM1P09493 DDX21-202ENST00000620315 4829 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
TPM1P09493 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
TPM1P09493 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
TPM1P09493 OS9-207ENST00000439210 1946 ntTSL 2 BASIC17.08■□□□□ 0.32
TPM1P09493 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
TPM1P09493 SNPH-201ENST00000381867 5533 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
TPM1P09493 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TPM1P09493 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC17.07■□□□□ 0.32
TPM1P09493 TOP3B-201ENST00000357179 2863 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TPM1P09493 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
TPM1P09493 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC17.07■□□□□ 0.32
TPM1P09493 BCL9L-201ENST00000334801 10005 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TPM1P09493 DCHS1-201ENST00000299441 10765 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TPM1P09493 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TPM1P09493 KYAT1-205ENST00000436267 2487 ntTSL 2 BASIC17.07■□□□□ 0.32
TPM1P09493 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
TPM1P09493 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TPM1P09493 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TPM1P09493 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC17.07■□□□□ 0.32
TPM1P09493 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC17.07■□□□□ 0.32
TPM1P09493 AC005252.3-201ENST00000623855 2258 ntBASIC17.07■□□□□ 0.32
TPM1P09493 SLC25A18-201ENST00000327451 2244 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TPM1P09493 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC17.07■□□□□ 0.32
TPM1P09493 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
TPM1P09493 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
TPM1P09493 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
TPM1P09493 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TPM1P09493 AC136604.1-201ENST00000418535 575 ntBASIC17.07■□□□□ 0.32
TPM1P09493 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC17.07■□□□□ 0.32
TPM1P09493 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC17.07■□□□□ 0.32
TPM1P09493 FXR1-221ENST00000491674 365 ntTSL 2 BASIC17.07■□□□□ 0.32
TPM1P09493 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC17.07■□□□□ 0.32
TPM1P09493 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC17.07■□□□□ 0.32
TPM1P09493 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC17.07■□□□□ 0.32
TPM1P09493 AC034105.1-201ENST00000563488 319 ntBASIC17.07■□□□□ 0.32
TPM1P09493 SPIB-207ENST00000597855 564 ntTSL 4 BASIC17.07■□□□□ 0.32
TPM1P09493 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC17.07■□□□□ 0.32
TPM1P09493 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC17.07■□□□□ 0.32
TPM1P09493 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC17.07■□□□□ 0.32
TPM1P09493 ST6GAL1-201ENST00000169298 4645 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TPM1P09493 ADGRE2-208ENST00000595839 2046 ntTSL 5 BASIC17.07■□□□□ 0.32
TPM1P09493 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
TPM1P09493 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TPM1P09493 SPG11-210ENST00000558319 6426 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
TPM1P09493 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC17.07■□□□□ 0.32
TPM1P09493 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC17.07■□□□□ 0.32
TPM1P09493 ITGA6-202ENST00000409080 5306 ntTSL 2 BASIC17.07■□□□□ 0.32
TPM1P09493 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC17.07■□□□□ 0.32
TPM1P09493 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC17.07■□□□□ 0.32
TPM1P09493 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TPM1P09493 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TPM1P09493 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
TPM1P09493 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TPM1P09493 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC17.07■□□□□ 0.32
TPM1P09493 PXDN-201ENST00000252804 6808 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TPM1P09493 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TPM1P09493 AL607033.1-201ENST00000623900 1599 ntBASIC17.06■□□□□ 0.32
TPM1P09493 MLLT11-201ENST00000368921 4075 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TPM1P09493 ARHGEF7-201ENST00000218789 5233 ntTSL 5 BASIC17.06■□□□□ 0.32
TPM1P09493 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
TPM1P09493 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
TPM1P09493 CSF2RB-202ENST00000403662 4863 ntAPPRIS P2 TSL 5 BASIC17.06■□□□□ 0.32
TPM1P09493 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
TPM1P09493 PI4K2A-201ENST00000370631 4189 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TPM1P09493 E2F7-202ENST00000416496 5297 ntTSL 5 BASIC17.06■□□□□ 0.32
TPM1P09493 C10orf71-201ENST00000374144 5230 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TPM1P09493 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TPM1P09493 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC17.06■□□□□ 0.32
TPM1P09493 FAM30A-205ENST00000630242 9612 ntTSL 2 BASIC17.06■□□□□ 0.32
TPM1P09493 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
TPM1P09493 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TPM1P09493 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
TPM1P09493 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
TPM1P09493 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TPM1P09493 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TPM1P09493 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC17.06■□□□□ 0.32
TPM1P09493 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC17.06■□□□□ 0.32
TPM1P09493 IGHV3-62-201ENST00000520057 340 ntBASIC17.06■□□□□ 0.32
TPM1P09493 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC17.06■□□□□ 0.32
TPM1P09493 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC17.06■□□□□ 0.32
TPM1P09493 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
TPM1P09493 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC17.06■□□□□ 0.32
TPM1P09493 AL513190.1-201ENST00000621254 727 ntBASIC17.06■□□□□ 0.32
TPM1P09493 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC17.06■□□□□ 0.32
TPM1P09493 PRELP-201ENST00000343110 5747 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TPM1P09493 DESI2-202ENST00000302550 4208 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TPM1P09493 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
TPM1P09493 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TPM1P09493 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC17.06■□□□□ 0.32
TPM1P09493 CACNA1I-202ENST00000402142 10004 ntAPPRIS P4 TSL 1 (best) BASIC17.06■□□□□ 0.32
TPM1P09493 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC17.06■□□□□ 0.32
TPM1P09493 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TPM1P09493 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
TPM1P09493 KDM6B-201ENST00000254846 6713 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
TPM1P09493 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TPM1P09493 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
TPM1P09493 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TPM1P09493 AJUBA-201ENST00000262713 4262 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 65.5 ms