Protein–RNA interactions for Protein: O43633

CHMP2A, Charged multivesicular body protein 2a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP2AO43633 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
CHMP2AO43633 AC018665.1-201ENST00000622927 1362 ntBASIC17.32■□□□□ 0.36
CHMP2AO43633 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC17.32■□□□□ 0.36
CHMP2AO43633 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
CHMP2AO43633 AC112693.3-201ENST00000624819 1983 ntBASIC17.32■□□□□ 0.36
CHMP2AO43633 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC17.32■□□□□ 0.36
CHMP2AO43633 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC17.32■□□□□ 0.36
CHMP2AO43633 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CHMP2AO43633 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CHMP2AO43633 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
CHMP2AO43633 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
CHMP2AO43633 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC17.32■□□□□ 0.36
CHMP2AO43633 GK-202ENST00000378941 458 ntTSL 3 BASIC17.32■□□□□ 0.36
CHMP2AO43633 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CHMP2AO43633 RPL5P21-201ENST00000404620 815 ntBASIC17.32■□□□□ 0.36
CHMP2AO43633 AC112492.5-201ENST00000421897 457 ntBASIC17.32■□□□□ 0.36
CHMP2AO43633 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC17.32■□□□□ 0.36
CHMP2AO43633 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CHMP2AO43633 BCRP2-202ENST00000447763 634 ntBASIC17.32■□□□□ 0.36
CHMP2AO43633 CROCCP4-201ENST00000457096 498 ntBASIC17.32■□□□□ 0.36
CHMP2AO43633 BCRP6-201ENST00000510112 632 ntBASIC17.32■□□□□ 0.36
CHMP2AO43633 BCRP7-201ENST00000511549 544 ntBASIC17.32■□□□□ 0.36
CHMP2AO43633 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC17.32■□□□□ 0.36
CHMP2AO43633 PUDP-206ENST00000540122 825 ntTSL 2 BASIC17.32■□□□□ 0.36
CHMP2AO43633 KRT17P8-201ENST00000540749 863 ntBASIC17.32■□□□□ 0.36
CHMP2AO43633 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
CHMP2AO43633 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC17.32■□□□□ 0.36
CHMP2AO43633 BX539320.1-201ENST00000623759 877 ntBASIC17.32■□□□□ 0.36
CHMP2AO43633 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC17.32■□□□□ 0.36
CHMP2AO43633 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC17.32■□□□□ 0.36
CHMP2AO43633 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CHMP2AO43633 PPT1-215ENST00000641471 2368 ntBASIC17.32■□□□□ 0.36
CHMP2AO43633 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CHMP2AO43633 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
CHMP2AO43633 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CHMP2AO43633 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
CHMP2AO43633 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CHMP2AO43633 MST1L-201ENST00000442552 2185 ntBASIC17.32■□□□□ 0.36
CHMP2AO43633 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CHMP2AO43633 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC17.32■□□□□ 0.36
CHMP2AO43633 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CHMP2AO43633 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
CHMP2AO43633 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CHMP2AO43633 AGER-206ENST00000375070 1463 ntTSL 5 BASIC17.31■□□□□ 0.36
CHMP2AO43633 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CHMP2AO43633 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
CHMP2AO43633 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC17.31■□□□□ 0.36
CHMP2AO43633 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CHMP2AO43633 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
CHMP2AO43633 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CHMP2AO43633 AC134312.5-201ENST00000568031 1313 ntBASIC17.31■□□□□ 0.36
CHMP2AO43633 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC17.31■□□□□ 0.36
CHMP2AO43633 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CHMP2AO43633 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC17.31■□□□□ 0.36
CHMP2AO43633 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
CHMP2AO43633 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC17.31■□□□□ 0.36
CHMP2AO43633 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CHMP2AO43633 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
CHMP2AO43633 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CHMP2AO43633 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CHMP2AO43633 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC17.31■□□□□ 0.36
CHMP2AO43633 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC17.31■□□□□ 0.36
CHMP2AO43633 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC17.31■□□□□ 0.36
CHMP2AO43633 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC17.31■□□□□ 0.36
CHMP2AO43633 SLC25A47P1-201ENST00000531577 414 ntBASIC17.31■□□□□ 0.36
CHMP2AO43633 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC17.31■□□□□ 0.36
CHMP2AO43633 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC17.31■□□□□ 0.36
CHMP2AO43633 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC17.31■□□□□ 0.36
CHMP2AO43633 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC17.31■□□□□ 0.36
CHMP2AO43633 AC009486.1-201ENST00000569860 813 ntBASIC17.31■□□□□ 0.36
CHMP2AO43633 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC17.31■□□□□ 0.36
CHMP2AO43633 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
CHMP2AO43633 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC17.31■□□□□ 0.36
CHMP2AO43633 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CHMP2AO43633 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CHMP2AO43633 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CHMP2AO43633 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CHMP2AO43633 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CHMP2AO43633 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
CHMP2AO43633 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CHMP2AO43633 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CHMP2AO43633 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CHMP2AO43633 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CHMP2AO43633 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CHMP2AO43633 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CHMP2AO43633 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
CHMP2AO43633 FAF1-202ENST00000396153 6817 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CHMP2AO43633 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CHMP2AO43633 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CHMP2AO43633 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
CHMP2AO43633 TMBIM7P-203ENST00000641617 1718 ntBASIC17.3■□□□□ 0.36
CHMP2AO43633 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CHMP2AO43633 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CHMP2AO43633 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC17.3■□□□□ 0.36
CHMP2AO43633 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CHMP2AO43633 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC17.3■□□□□ 0.36
CHMP2AO43633 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
CHMP2AO43633 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CHMP2AO43633 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
CHMP2AO43633 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 88.4 ms