Protein–RNA interactions for Protein: O00570

SOX1, Transcription factor SOX-1, humanhuman

Predicted RBP Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX1O00570 SLC50A1-202ENST00000368401 1166 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
SOX1O00570 GSTP1-201ENST00000398603 700 ntTSL 3 BASIC16.11■□□□□ 0.17
SOX1O00570 RN7SKP175-201ENST00000408472 289 ntBASIC16.11■□□□□ 0.17
SOX1O00570 AC016757.1-202ENST00000409376 892 ntTSL 3 BASIC16.11■□□□□ 0.17
SOX1O00570 AC156455.1-203ENST00000423999 893 ntTSL 2 BASIC16.11■□□□□ 0.17
SOX1O00570 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC16.11■□□□□ 0.17
SOX1O00570 AC012441.2-201ENST00000444843 739 ntBASIC16.11■□□□□ 0.17
SOX1O00570 DUTP3-201ENST00000450025 415 ntBASIC16.11■□□□□ 0.17
SOX1O00570 AL135901.1-201ENST00000451812 333 ntBASIC16.11■□□□□ 0.17
SOX1O00570 CISD2-202ENST00000503643 808 ntTSL 2 BASIC16.11■□□□□ 0.17
SOX1O00570 ROPN1B-203ENST00000505382 713 ntTSL 2 BASIC16.11■□□□□ 0.17
SOX1O00570 AC105254.1-201ENST00000507782 621 ntTSL 4 BASIC16.11■□□□□ 0.17
SOX1O00570 AC129102.1-201ENST00000535755 525 ntTSL 4 BASIC16.11■□□□□ 0.17
SOX1O00570 AC007656.1-201ENST00000552238 573 ntTSL 4 BASIC16.11■□□□□ 0.17
SOX1O00570 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
SOX1O00570 AL049833.2-202ENST00000556773 626 ntTSL 3 BASIC16.11■□□□□ 0.17
SOX1O00570 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
SOX1O00570 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC16.11■□□□□ 0.17
SOX1O00570 TTC23L-209ENST00000638320 1185 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
SOX1O00570 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC16.11■□□□□ 0.17
SOX1O00570 AC079325.2-201ENST00000641710 606 ntAPPRIS P5 BASIC16.11■□□□□ 0.17
SOX1O00570 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SOX1O00570 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SOX1O00570 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
SOX1O00570 TNFRSF1A-202ENST00000366159 1339 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
SOX1O00570 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
SOX1O00570 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
SOX1O00570 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC16.11■□□□□ 0.17
SOX1O00570 ID2-203ENST00000396290 1362 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SOX1O00570 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
SOX1O00570 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC16.11■□□□□ 0.17
SOX1O00570 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SOX1O00570 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SOX1O00570 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC16.1■□□□□ 0.17
SOX1O00570 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC16.1■□□□□ 0.17
SOX1O00570 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SOX1O00570 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
SOX1O00570 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SOX1O00570 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SOX1O00570 GNE-204ENST00000539208 2190 ntTSL 2 BASIC16.1■□□□□ 0.17
SOX1O00570 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC16.1■□□□□ 0.17
SOX1O00570 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC16.1■□□□□ 0.17
SOX1O00570 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC16.1■□□□□ 0.17
SOX1O00570 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC16.1■□□□□ 0.17
SOX1O00570 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SOX1O00570 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
SOX1O00570 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
SOX1O00570 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
SOX1O00570 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
SOX1O00570 CHIA-204ENST00000369740 1625 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SOX1O00570 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
SOX1O00570 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SOX1O00570 RPL14-202ENST00000396203 916 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SOX1O00570 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC16.1■□□□□ 0.17
SOX1O00570 AL390778.2-201ENST00000420883 886 ntTSL 3 BASIC16.1■□□□□ 0.17
SOX1O00570 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC16.1■□□□□ 0.17
SOX1O00570 HMGB3-204ENST00000448905 812 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
SOX1O00570 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC16.1■□□□□ 0.17
SOX1O00570 FTH1P22-201ENST00000456305 520 ntBASIC16.1■□□□□ 0.17
SOX1O00570 RN7SL494P-201ENST00000461517 304 ntBASIC16.1■□□□□ 0.17
SOX1O00570 KHDRBS3-206ENST00000520981 1243 ntTSL 5 BASIC16.1■□□□□ 0.17
SOX1O00570 LZTS1-AS1-201ENST00000523103 892 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
SOX1O00570 POLD4-206ENST00000530584 899 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
SOX1O00570 AC108471.2-201ENST00000533736 1061 ntTSL 3 BASIC16.1■□□□□ 0.17
SOX1O00570 SRP14-204ENST00000558720 780 ntTSL 2 BASIC16.1■□□□□ 0.17
SOX1O00570 TMEM98-205ENST00000578289 806 ntTSL 3 BASIC16.1■□□□□ 0.17
SOX1O00570 Metazoa_SRP.127-201ENST00000614914 302 ntBASIC16.1■□□□□ 0.17
SOX1O00570 AC009560.1-201ENST00000620208 434 ntBASIC16.1■□□□□ 0.17
SOX1O00570 PRKAB1-210ENST00000630317 258 ntTSL 2 BASIC16.1■□□□□ 0.17
SOX1O00570 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
SOX1O00570 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
SOX1O00570 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC16.1■□□□□ 0.17
SOX1O00570 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC16.1■□□□□ 0.17
SOX1O00570 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC16.1■□□□□ 0.17
SOX1O00570 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC16.1■□□□□ 0.17
SOX1O00570 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
SOX1O00570 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
SOX1O00570 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
SOX1O00570 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
SOX1O00570 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
SOX1O00570 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
SOX1O00570 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC16.1■□□□□ 0.17
SOX1O00570 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
SOX1O00570 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
SOX1O00570 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
SOX1O00570 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC16.09■□□□□ 0.17
SOX1O00570 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SOX1O00570 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SOX1O00570 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
SOX1O00570 CNN1-201ENST00000252456 1633 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SOX1O00570 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC16.09■□□□□ 0.17
SOX1O00570 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC16.09■□□□□ 0.17
SOX1O00570 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SOX1O00570 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC16.09■□□□□ 0.17
SOX1O00570 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SOX1O00570 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
SOX1O00570 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
SOX1O00570 LRRFIP1P1-201ENST00000498774 2246 ntBASIC16.09■□□□□ 0.17
SOX1O00570 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
SOX1O00570 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC16.09■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 47.3 ms