Protein–RNA interactions for Protein: H7C350

CCDC188, Coiled-coil domain-containing protein 188, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC188H7C350 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
CCDC188H7C350 ACER2-201ENST00000340967 2238 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CCDC188H7C350 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CCDC188H7C350 ICA1-207ENST00000406470 2440 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
CCDC188H7C350 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
CCDC188H7C350 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CCDC188H7C350 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CCDC188H7C350 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC16.07■□□□□ 0.16
CCDC188H7C350 CYP1B1-205ENST00000610745 5250 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CCDC188H7C350 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC16.06■□□□□ 0.16
CCDC188H7C350 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
CCDC188H7C350 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
CCDC188H7C350 DSE-202ENST00000359564 4037 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CCDC188H7C350 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC16.06■□□□□ 0.16
CCDC188H7C350 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
CCDC188H7C350 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CCDC188H7C350 ZNF785-202ENST00000470110 2867 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
CCDC188H7C350 OSBPL7-211ENST00000613735 2836 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CCDC188H7C350 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CCDC188H7C350 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CCDC188H7C350 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CCDC188H7C350 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
CCDC188H7C350 BAK1-201ENST00000360661 2132 ntTSL 5 BASIC16.06■□□□□ 0.16
CCDC188H7C350 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CCDC188H7C350 ARHGAP23P1-201ENST00000562773 1937 ntBASIC16.06■□□□□ 0.16
CCDC188H7C350 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CCDC188H7C350 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
CCDC188H7C350 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
CCDC188H7C350 AC092135.3-201ENST00000624151 1846 ntBASIC16.06■□□□□ 0.16
CCDC188H7C350 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC16.06■□□□□ 0.16
CCDC188H7C350 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC16.06■□□□□ 0.16
CCDC188H7C350 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC16.06■□□□□ 0.16
CCDC188H7C350 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CCDC188H7C350 SPEG-201ENST00000312358 10782 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
CCDC188H7C350 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC16.06■□□□□ 0.16
CCDC188H7C350 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC16.06■□□□□ 0.16
CCDC188H7C350 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CCDC188H7C350 ITSN1-210ENST00000399353 3913 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CCDC188H7C350 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
CCDC188H7C350 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
CCDC188H7C350 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC16.06■□□□□ 0.16
CCDC188H7C350 SYS1-203ENST00000414310 795 ntTSL 3 BASIC16.06■□□□□ 0.16
CCDC188H7C350 AL450487.1-201ENST00000426799 995 ntBASIC16.06■□□□□ 0.16
CCDC188H7C350 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC16.06■□□□□ 0.16
CCDC188H7C350 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
CCDC188H7C350 PTK7-212ENST00000476760 902 ntTSL 2 BASIC16.06■□□□□ 0.16
CCDC188H7C350 GATB-205ENST00000508611 605 ntTSL 2 BASIC16.06■□□□□ 0.16
CCDC188H7C350 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC16.06■□□□□ 0.16
CCDC188H7C350 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC16.06■□□□□ 0.16
CCDC188H7C350 BANF1P1-201ENST00000553684 263 ntBASIC16.06■□□□□ 0.16
CCDC188H7C350 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC16.06■□□□□ 0.16
CCDC188H7C350 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC16.06■□□□□ 0.16
CCDC188H7C350 UBL5-208ENST00000593087 320 ntTSL 3 BASIC16.06■□□□□ 0.16
CCDC188H7C350 CITED2-204ENST00000618718 901 ntTSL 2 BASIC16.06■□□□□ 0.16
CCDC188H7C350 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC16.06■□□□□ 0.16
CCDC188H7C350 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC16.06■□□□□ 0.16
CCDC188H7C350 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC16.06■□□□□ 0.16
CCDC188H7C350 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC16.06■□□□□ 0.16
CCDC188H7C350 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
CCDC188H7C350 CCNF-202ENST00000397066 4283 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CCDC188H7C350 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
CCDC188H7C350 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CCDC188H7C350 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
CCDC188H7C350 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CCDC188H7C350 TTLL10-AS1-201ENST00000379317 3532 ntTSL 2 BASIC16.06■□□□□ 0.16
CCDC188H7C350 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CCDC188H7C350 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
CCDC188H7C350 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CCDC188H7C350 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CCDC188H7C350 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC16.05■□□□□ 0.16
CCDC188H7C350 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CCDC188H7C350 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
CCDC188H7C350 TK1-203ENST00000588734 1681 ntTSL 2 BASIC16.05■□□□□ 0.16
CCDC188H7C350 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CCDC188H7C350 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CCDC188H7C350 UNC13B-201ENST00000378495 6303 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
CCDC188H7C350 AL928921.2-201ENST00000641325 2442 ntBASIC16.05■□□□□ 0.16
CCDC188H7C350 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CCDC188H7C350 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
CCDC188H7C350 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
CCDC188H7C350 C1R-201ENST00000535233 2211 ntTSL 2 BASIC16.05■□□□□ 0.16
CCDC188H7C350 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC16.05■□□□□ 0.16
CCDC188H7C350 AC067750.1-201ENST00000608826 6545 ntBASIC16.05■□□□□ 0.16
CCDC188H7C350 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CCDC188H7C350 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CCDC188H7C350 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CCDC188H7C350 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CCDC188H7C350 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
CCDC188H7C350 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC16.05■□□□□ 0.16
CCDC188H7C350 USP40-206ENST00000443711 628 ntTSL 2 BASIC16.05■□□□□ 0.16
CCDC188H7C350 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC16.05■□□□□ 0.16
CCDC188H7C350 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC16.05■□□□□ 0.16
CCDC188H7C350 SLED1-202ENST00000512051 380 ntBASIC16.05■□□□□ 0.16
CCDC188H7C350 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC16.05■□□□□ 0.16
CCDC188H7C350 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC16.05■□□□□ 0.16
CCDC188H7C350 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC16.05■□□□□ 0.16
CCDC188H7C350 COX5A-206ENST00000568783 571 ntTSL 3 BASIC16.05■□□□□ 0.16
CCDC188H7C350 MAX-219ENST00000618858 2141 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CCDC188H7C350 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
CCDC188H7C350 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 64.7 ms