Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC14.79□□□□□ -0.04
PCDHGA1Q9Y5H4 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
PCDHGA1Q9Y5H4 PCDHA1-201ENST00000378133 2726 ntBASIC14.79□□□□□ -0.04
PCDHGA1Q9Y5H4 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
PCDHGA1Q9Y5H4 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC14.79□□□□□ -0.04
PCDHGA1Q9Y5H4 DOC2GP-204ENST00000639052 2548 ntBASIC14.79□□□□□ -0.04
PCDHGA1Q9Y5H4 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
PCDHGA1Q9Y5H4 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC14.78□□□□□ -0.04
PCDHGA1Q9Y5H4 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
PCDHGA1Q9Y5H4 ABR-203ENST00000536794 2213 ntTSL 2 BASIC14.78□□□□□ -0.04
PCDHGA1Q9Y5H4 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC14.78□□□□□ -0.04
PCDHGA1Q9Y5H4 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
PCDHGA1Q9Y5H4 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
PCDHGA1Q9Y5H4 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
PCDHGA1Q9Y5H4 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
PCDHGA1Q9Y5H4 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC14.78□□□□□ -0.04
PCDHGA1Q9Y5H4 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
PCDHGA1Q9Y5H4 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
PCDHGA1Q9Y5H4 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
PCDHGA1Q9Y5H4 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
PCDHGA1Q9Y5H4 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC14.78□□□□□ -0.04
PCDHGA1Q9Y5H4 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
PCDHGA1Q9Y5H4 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC14.78□□□□□ -0.04
PCDHGA1Q9Y5H4 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
PCDHGA1Q9Y5H4 BORCS5-201ENST00000298571 549 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
PCDHGA1Q9Y5H4 SMS-201ENST00000379404 1174 ntTSL 3 BASIC14.78□□□□□ -0.04
PCDHGA1Q9Y5H4 OSM-202ENST00000403389 1000 ntAPPRIS ALT2 TSL 3 BASIC14.78□□□□□ -0.04
PCDHGA1Q9Y5H4 AC016825.1-201ENST00000433600 778 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
PCDHGA1Q9Y5H4 NKAIN1P1-201ENST00000435754 582 ntBASIC14.78□□□□□ -0.04
PCDHGA1Q9Y5H4 AC253536.4-201ENST00000440539 267 ntBASIC14.78□□□□□ -0.04
PCDHGA1Q9Y5H4 LINC02028-203ENST00000443776 453 ntTSL 3 BASIC14.78□□□□□ -0.04
PCDHGA1Q9Y5H4 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
PCDHGA1Q9Y5H4 IMP3P2-201ENST00000489760 475 ntBASIC14.78□□□□□ -0.04
PCDHGA1Q9Y5H4 FADS2-212ENST00000522639 360 ntTSL 5 BASIC14.78□□□□□ -0.04
PCDHGA1Q9Y5H4 AL136309.4-201ENST00000527831 640 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
PCDHGA1Q9Y5H4 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
PCDHGA1Q9Y5H4 FADS2-215ENST00000574708 385 ntTSL 3 BASIC14.78□□□□□ -0.04
PCDHGA1Q9Y5H4 RN7SL713P-201ENST00000582127 302 ntBASIC14.78□□□□□ -0.04
PCDHGA1Q9Y5H4 PPY2P-201ENST00000582808 702 ntBASIC14.78□□□□□ -0.04
PCDHGA1Q9Y5H4 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
PCDHGA1Q9Y5H4 INO80C-210ENST00000590757 595 ntTSL 2 BASIC14.78□□□□□ -0.04
PCDHGA1Q9Y5H4 AC010323.1-201ENST00000598884 580 ntAPPRIS P1 TSL 4 BASIC14.78□□□□□ -0.04
PCDHGA1Q9Y5H4 AC025181.2-201ENST00000606994 802 ntBASIC14.78□□□□□ -0.04
PCDHGA1Q9Y5H4 SIRT2-219ENST00000613542 1170 ntTSL 5 BASIC14.78□□□□□ -0.04
PCDHGA1Q9Y5H4 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
PCDHGA1Q9Y5H4 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC14.78□□□□□ -0.04
PCDHGA1Q9Y5H4 AC100757.4-201ENST00000626934 759 ntBASIC14.78□□□□□ -0.04
PCDHGA1Q9Y5H4 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
PCDHGA1Q9Y5H4 AC006449.6-201ENST00000612330 2296 ntBASIC14.78□□□□□ -0.04
PCDHGA1Q9Y5H4 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
PCDHGA1Q9Y5H4 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
PCDHGA1Q9Y5H4 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
PCDHGA1Q9Y5H4 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
PCDHGA1Q9Y5H4 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
PCDHGA1Q9Y5H4 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
PCDHGA1Q9Y5H4 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
PCDHGA1Q9Y5H4 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC14.78□□□□□ -0.04
PCDHGA1Q9Y5H4 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
PCDHGA1Q9Y5H4 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
PCDHGA1Q9Y5H4 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
PCDHGA1Q9Y5H4 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC14.77□□□□□ -0.04
PCDHGA1Q9Y5H4 AMT-233ENST00000636522 1620 ntTSL 2 BASIC14.77□□□□□ -0.04
PCDHGA1Q9Y5H4 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
PCDHGA1Q9Y5H4 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC14.77□□□□□ -0.04
PCDHGA1Q9Y5H4 FLII-221ENST00000578558 2377 ntTSL 5 BASIC14.77□□□□□ -0.04
PCDHGA1Q9Y5H4 AC008741.2-201ENST00000612792 3115 ntBASIC14.77□□□□□ -0.04
PCDHGA1Q9Y5H4 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
PCDHGA1Q9Y5H4 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
PCDHGA1Q9Y5H4 LINC00554-201ENST00000564841 3011 ntBASIC14.77□□□□□ -0.04
PCDHGA1Q9Y5H4 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
PCDHGA1Q9Y5H4 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
PCDHGA1Q9Y5H4 KRT8P14-201ENST00000414254 1442 ntBASIC14.77□□□□□ -0.04
PCDHGA1Q9Y5H4 ACTR2-205ENST00000542850 1429 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
PCDHGA1Q9Y5H4 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC14.77□□□□□ -0.04
PCDHGA1Q9Y5H4 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC14.77□□□□□ -0.04
PCDHGA1Q9Y5H4 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
PCDHGA1Q9Y5H4 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
PCDHGA1Q9Y5H4 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
PCDHGA1Q9Y5H4 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.04
PCDHGA1Q9Y5H4 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC14.77□□□□□ -0.04
PCDHGA1Q9Y5H4 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC14.77□□□□□ -0.04
PCDHGA1Q9Y5H4 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
PCDHGA1Q9Y5H4 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
PCDHGA1Q9Y5H4 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
PCDHGA1Q9Y5H4 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
PCDHGA1Q9Y5H4 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC14.77□□□□□ -0.05
PCDHGA1Q9Y5H4 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
PCDHGA1Q9Y5H4 SPAG11A-203ENST00000351436 534 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
PCDHGA1Q9Y5H4 SPAG11B-204ENST00000361111 534 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
PCDHGA1Q9Y5H4 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
PCDHGA1Q9Y5H4 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC14.77□□□□□ -0.05
PCDHGA1Q9Y5H4 HLA-DQB2-229ENST00000411527 1059 ntBASIC14.77□□□□□ -0.05
PCDHGA1Q9Y5H4 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC14.77□□□□□ -0.05
PCDHGA1Q9Y5H4 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.05
PCDHGA1Q9Y5H4 AL451042.2-201ENST00000424774 904 ntTSL 2 BASIC14.77□□□□□ -0.05
PCDHGA1Q9Y5H4 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
PCDHGA1Q9Y5H4 PTPA-217ENST00000434095 870 ntTSL 2 BASIC14.77□□□□□ -0.05
PCDHGA1Q9Y5H4 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC14.77□□□□□ -0.05
PCDHGA1Q9Y5H4 PENK-202ENST00000451791 1029 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
PCDHGA1Q9Y5H4 RPS2P36-201ENST00000456516 831 ntBASIC14.77□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms