Protein–RNA interactions for Protein: Q9UI33

SCN11A, Sodium channel protein type 11 subunit alpha, humanhuman

Predictions only

Length 1,791 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN11AQ9UI33 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC19.35■□□□□ 0.69
SCN11AQ9UI33 AWAT1-201ENST00000374521 1365 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SCN11AQ9UI33 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
SCN11AQ9UI33 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC19.35■□□□□ 0.69
SCN11AQ9UI33 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SCN11AQ9UI33 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SCN11AQ9UI33 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
SCN11AQ9UI33 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SCN11AQ9UI33 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
SCN11AQ9UI33 AC136621.1-201ENST00000624017 2304 ntBASIC19.35■□□□□ 0.69
SCN11AQ9UI33 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
SCN11AQ9UI33 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC19.34■□□□□ 0.69
SCN11AQ9UI33 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SCN11AQ9UI33 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SCN11AQ9UI33 PRTFDC1-202ENST00000376376 741 ntTSL 2 BASIC19.34■□□□□ 0.69
SCN11AQ9UI33 UQCRQ-203ENST00000378670 839 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SCN11AQ9UI33 Z82214.1-201ENST00000419643 988 ntTSL 3 BASIC19.34■□□□□ 0.69
SCN11AQ9UI33 LY6G6C-202ENST00000495859 937 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SCN11AQ9UI33 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC19.34■□□□□ 0.69
SCN11AQ9UI33 FADS2-212ENST00000522639 360 ntTSL 5 BASIC19.34■□□□□ 0.69
SCN11AQ9UI33 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC19.34■□□□□ 0.69
SCN11AQ9UI33 AC100827.2-201ENST00000563214 1194 ntBASIC19.34■□□□□ 0.69
SCN11AQ9UI33 FADS2-215ENST00000574708 385 ntTSL 3 BASIC19.34■□□□□ 0.69
SCN11AQ9UI33 AL645941.3-201ENST00000580587 577 ntTSL 4 BASIC19.34■□□□□ 0.69
SCN11AQ9UI33 MIR4706-201ENST00000582134 82 ntBASIC19.34■□□□□ 0.69
SCN11AQ9UI33 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC19.34■□□□□ 0.69
SCN11AQ9UI33 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SCN11AQ9UI33 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SCN11AQ9UI33 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SCN11AQ9UI33 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SCN11AQ9UI33 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC19.34■□□□□ 0.69
SCN11AQ9UI33 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC19.34■□□□□ 0.69
SCN11AQ9UI33 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC19.34■□□□□ 0.69
SCN11AQ9UI33 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
SCN11AQ9UI33 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
SCN11AQ9UI33 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SCN11AQ9UI33 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SCN11AQ9UI33 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SCN11AQ9UI33 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
SCN11AQ9UI33 UBE4B-203ENST00000377153 1273 ntTSL 3 BASIC19.34■□□□□ 0.69
SCN11AQ9UI33 PARP8-206ENST00000503665 572 ntTSL 4 BASIC19.34■□□□□ 0.69
SCN11AQ9UI33 AC117500.3-201ENST00000537032 666 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SCN11AQ9UI33 SEC23A-204ENST00000548032 907 ntTSL 2 BASIC19.34■□□□□ 0.69
SCN11AQ9UI33 AC008805.1-201ENST00000590892 364 ntBASIC19.34■□□□□ 0.69
SCN11AQ9UI33 SPCS2P2-201ENST00000603270 608 ntBASIC19.34■□□□□ 0.69
SCN11AQ9UI33 AC018635.2-201ENST00000608625 364 ntBASIC19.34■□□□□ 0.69
SCN11AQ9UI33 BX088702.1-201ENST00000610784 235 ntBASIC19.34■□□□□ 0.69
SCN11AQ9UI33 NDUFB5-216ENST00000611971 951 ntTSL 2 BASIC19.34■□□□□ 0.69
SCN11AQ9UI33 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SCN11AQ9UI33 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SCN11AQ9UI33 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SCN11AQ9UI33 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SCN11AQ9UI33 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.69
SCN11AQ9UI33 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
SCN11AQ9UI33 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC19.33■□□□□ 0.69
SCN11AQ9UI33 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
SCN11AQ9UI33 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC19.33■□□□□ 0.69
SCN11AQ9UI33 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
SCN11AQ9UI33 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
SCN11AQ9UI33 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC19.33■□□□□ 0.69
SCN11AQ9UI33 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.68
SCN11AQ9UI33 MYL12B-201ENST00000237500 1210 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SCN11AQ9UI33 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SCN11AQ9UI33 CRYBA4-201ENST00000354760 811 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SCN11AQ9UI33 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
SCN11AQ9UI33 ISCA2P1-201ENST00000425548 448 ntBASIC19.33■□□□□ 0.68
SCN11AQ9UI33 AL133466.1-201ENST00000447582 150 ntBASIC19.33■□□□□ 0.68
SCN11AQ9UI33 AC012618.1-201ENST00000461223 412 ntBASIC19.33■□□□□ 0.68
SCN11AQ9UI33 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SCN11AQ9UI33 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC19.33■□□□□ 0.68
SCN11AQ9UI33 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC19.33■□□□□ 0.68
SCN11AQ9UI33 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SCN11AQ9UI33 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC19.33■□□□□ 0.68
SCN11AQ9UI33 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC19.33■□□□□ 0.68
SCN11AQ9UI33 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC19.33■□□□□ 0.68
SCN11AQ9UI33 GOSR2-203ENST00000415811 2171 ntTSL 5 BASIC19.33■□□□□ 0.68
SCN11AQ9UI33 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
SCN11AQ9UI33 HMBS-216ENST00000543090 1347 ntTSL 5 BASIC19.33■□□□□ 0.68
SCN11AQ9UI33 NTM-205ENST00000425719 1607 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
SCN11AQ9UI33 SLCO6A1-207ENST00000513675 1611 ntTSL 2 BASIC19.33■□□□□ 0.68
SCN11AQ9UI33 AC018629.1-201ENST00000623381 1736 ntBASIC19.33■□□□□ 0.68
SCN11AQ9UI33 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
SCN11AQ9UI33 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
SCN11AQ9UI33 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC19.32■□□□□ 0.68
SCN11AQ9UI33 AL157791.1-201ENST00000553667 1699 ntBASIC19.32■□□□□ 0.68
SCN11AQ9UI33 FXYD5-201ENST00000342879 1580 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
SCN11AQ9UI33 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SCN11AQ9UI33 COX4I1-201ENST00000253452 708 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SCN11AQ9UI33 AC078875.1-201ENST00000431907 724 ntBASIC19.32■□□□□ 0.68
SCN11AQ9UI33 LINC01088-201ENST00000437737 973 ntTSL 5 BASIC19.32■□□□□ 0.68
SCN11AQ9UI33 PUDPP3-201ENST00000445368 636 ntBASIC19.32■□□□□ 0.68
SCN11AQ9UI33 AC006122.1-201ENST00000493323 440 ntBASIC19.32■□□□□ 0.68
SCN11AQ9UI33 STUB1-204ENST00000564370 875 ntTSL 2 BASIC19.32■□□□□ 0.68
SCN11AQ9UI33 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SCN11AQ9UI33 AC090386.1-202ENST00000586610 469 ntTSL 3 BASIC19.32■□□□□ 0.68
SCN11AQ9UI33 AC008743.1-201ENST00000596350 813 ntTSL 4 BASIC19.32■□□□□ 0.68
SCN11AQ9UI33 Metazoa_SRP.69-201ENST00000615730 281 ntBASIC19.32■□□□□ 0.68
SCN11AQ9UI33 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SCN11AQ9UI33 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SCN11AQ9UI33 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 100.1 ms