Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
CCDC144BQ3MJ40 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC17.93■□□□□ 0.46
CCDC144BQ3MJ40 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
CCDC144BQ3MJ40 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
CCDC144BQ3MJ40 HNRNPA1P48-201ENST00000562726 1377 ntBASIC17.92■□□□□ 0.46
CCDC144BQ3MJ40 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC17.92■□□□□ 0.46
CCDC144BQ3MJ40 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC144BQ3MJ40 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC144BQ3MJ40 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC144BQ3MJ40 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC17.92■□□□□ 0.46
CCDC144BQ3MJ40 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC144BQ3MJ40 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC17.92■□□□□ 0.46
CCDC144BQ3MJ40 AC090616.6-203ENST00000579186 1945 ntBASIC17.92■□□□□ 0.46
CCDC144BQ3MJ40 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC144BQ3MJ40 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC144BQ3MJ40 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC144BQ3MJ40 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC17.92■□□□□ 0.46
CCDC144BQ3MJ40 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC144BQ3MJ40 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC144BQ3MJ40 LBX2-201ENST00000341396 886 ntTSL 3 BASIC17.92■□□□□ 0.46
CCDC144BQ3MJ40 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
CCDC144BQ3MJ40 NME4-207ENST00000450036 985 ntTSL 3 BASIC17.92■□□□□ 0.46
CCDC144BQ3MJ40 CTBP2P5-201ENST00000454986 1264 ntBASIC17.92■□□□□ 0.46
CCDC144BQ3MJ40 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC17.92■□□□□ 0.46
CCDC144BQ3MJ40 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC17.92■□□□□ 0.46
CCDC144BQ3MJ40 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
CCDC144BQ3MJ40 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC17.92■□□□□ 0.46
CCDC144BQ3MJ40 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC17.92■□□□□ 0.46
CCDC144BQ3MJ40 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC17.92■□□□□ 0.46
CCDC144BQ3MJ40 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC17.92■□□□□ 0.46
CCDC144BQ3MJ40 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC17.92■□□□□ 0.46
CCDC144BQ3MJ40 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC17.92■□□□□ 0.46
CCDC144BQ3MJ40 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC17.92■□□□□ 0.46
CCDC144BQ3MJ40 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC144BQ3MJ40 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
CCDC144BQ3MJ40 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC144BQ3MJ40 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC17.92■□□□□ 0.46
CCDC144BQ3MJ40 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC144BQ3MJ40 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC144BQ3MJ40 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC144BQ3MJ40 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC17.92■□□□□ 0.46
CCDC144BQ3MJ40 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC17.92■□□□□ 0.46
CCDC144BQ3MJ40 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC17.92■□□□□ 0.46
CCDC144BQ3MJ40 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
CCDC144BQ3MJ40 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC17.91■□□□□ 0.46
CCDC144BQ3MJ40 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC144BQ3MJ40 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC144BQ3MJ40 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC17.91■□□□□ 0.46
CCDC144BQ3MJ40 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC144BQ3MJ40 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC17.91■□□□□ 0.46
CCDC144BQ3MJ40 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC17.91■□□□□ 0.46
CCDC144BQ3MJ40 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC144BQ3MJ40 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC144BQ3MJ40 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC144BQ3MJ40 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC144BQ3MJ40 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
CCDC144BQ3MJ40 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC17.91■□□□□ 0.46
CCDC144BQ3MJ40 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC144BQ3MJ40 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC144BQ3MJ40 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC17.91■□□□□ 0.46
CCDC144BQ3MJ40 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC17.91■□□□□ 0.46
CCDC144BQ3MJ40 APOA1-205ENST00000375329 927 ntTSL 2 BASIC17.91■□□□□ 0.46
CCDC144BQ3MJ40 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC144BQ3MJ40 KRT18P64-201ENST00000434946 1219 ntBASIC17.91■□□□□ 0.46
CCDC144BQ3MJ40 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC17.91■□□□□ 0.46
CCDC144BQ3MJ40 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC17.91■□□□□ 0.46
CCDC144BQ3MJ40 PACS1-203ENST00000524815 628 ntTSL 4 BASIC17.91■□□□□ 0.46
CCDC144BQ3MJ40 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC17.91■□□□□ 0.46
CCDC144BQ3MJ40 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC17.91■□□□□ 0.46
CCDC144BQ3MJ40 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC17.91■□□□□ 0.46
CCDC144BQ3MJ40 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC144BQ3MJ40 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC17.91■□□□□ 0.46
CCDC144BQ3MJ40 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC144BQ3MJ40 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
CCDC144BQ3MJ40 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC17.91■□□□□ 0.46
CCDC144BQ3MJ40 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
CCDC144BQ3MJ40 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC17.91■□□□□ 0.46
CCDC144BQ3MJ40 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC144BQ3MJ40 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC17.91■□□□□ 0.46
CCDC144BQ3MJ40 AC112693.3-201ENST00000624819 1983 ntBASIC17.91■□□□□ 0.46
CCDC144BQ3MJ40 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC144BQ3MJ40 AC093525.8-201ENST00000624099 1342 ntBASIC17.91■□□□□ 0.46
CCDC144BQ3MJ40 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC144BQ3MJ40 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC17.91■□□□□ 0.46
CCDC144BQ3MJ40 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC144BQ3MJ40 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
CCDC144BQ3MJ40 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC144BQ3MJ40 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC144BQ3MJ40 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
CCDC144BQ3MJ40 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC17.91■□□□□ 0.46
CCDC144BQ3MJ40 AC105250.1-201ENST00000509378 2057 ntBASIC17.91■□□□□ 0.46
CCDC144BQ3MJ40 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC144BQ3MJ40 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC144BQ3MJ40 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC17.9■□□□□ 0.46
CCDC144BQ3MJ40 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC144BQ3MJ40 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
CCDC144BQ3MJ40 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
CCDC144BQ3MJ40 DIAPH2-204ENST00000373054 3376 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
CCDC144BQ3MJ40 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CCDC144BQ3MJ40 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 88.3 ms