Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 PMS2P7-201ENST00000506558 1336 ntBASIC12.92□□□□□ -0.34
HOXA1P49639 AP4B1-201ENST00000256658 2742 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
HOXA1P49639 SLC6A5-202ENST00000525748 7084 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
HOXA1P49639 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
HOXA1P49639 LINC01230-201ENST00000625222 3017 ntBASIC12.92□□□□□ -0.34
HOXA1P49639 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
HOXA1P49639 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
HOXA1P49639 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC12.92□□□□□ -0.34
HOXA1P49639 AC148477.4-201ENST00000613430 1793 ntBASIC12.92□□□□□ -0.34
HOXA1P49639 VWCE-202ENST00000335613 3640 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
HOXA1P49639 PML-201ENST00000268058 4508 ntAPPRIS P4 TSL 1 (best) BASIC12.92□□□□□ -0.34
HOXA1P49639 TXNDC12-201ENST00000371626 2396 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
HOXA1P49639 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
HOXA1P49639 AMPD2-219ENST00000528667 3134 ntAPPRIS P2 TSL 1 (best) BASIC12.92□□□□□ -0.34
HOXA1P49639 KIF3A-201ENST00000378735 3266 ntAPPRIS ALT1 TSL 1 (best) BASIC12.92□□□□□ -0.34
HOXA1P49639 ABCC6-208ENST00000622290 4941 ntTSL 5 BASIC12.92□□□□□ -0.34
HOXA1P49639 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
HOXA1P49639 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC12.92□□□□□ -0.34
HOXA1P49639 CRYGEP-201ENST00000412192 528 ntBASIC12.92□□□□□ -0.34
HOXA1P49639 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC12.92□□□□□ -0.34
HOXA1P49639 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC12.92□□□□□ -0.34
HOXA1P49639 HS6ST1P1-201ENST00000481504 1234 ntBASIC12.92□□□□□ -0.34
HOXA1P49639 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
HOXA1P49639 POLD4-207ENST00000531239 584 ntTSL 2 BASIC12.92□□□□□ -0.34
HOXA1P49639 AC109635.5-201ENST00000533593 962 ntBASIC12.92□□□□□ -0.34
HOXA1P49639 SFSWAP-210ENST00000541286 3219 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
HOXA1P49639 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC12.92□□□□□ -0.34
HOXA1P49639 AL009183.1-201ENST00000603760 355 ntBASIC12.92□□□□□ -0.34
HOXA1P49639 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC12.92□□□□□ -0.34
HOXA1P49639 FAM215A-202ENST00000632077 792 ntBASIC12.92□□□□□ -0.34
HOXA1P49639 TRIO-202ENST00000344204 11100 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
HOXA1P49639 AC148477.2-201ENST00000537762 3039 ntTSL 3 BASIC12.92□□□□□ -0.34
HOXA1P49639 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
HOXA1P49639 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
HOXA1P49639 SEZ6-203ENST00000360295 4306 ntAPPRIS ALT2 TSL 5 BASIC12.92□□□□□ -0.34
HOXA1P49639 FRMD8-201ENST00000317568 3723 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
HOXA1P49639 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
HOXA1P49639 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC12.92□□□□□ -0.34
HOXA1P49639 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
HOXA1P49639 CHFR-205ENST00000450056 3250 ntTSL 2 BASIC12.92□□□□□ -0.34
HOXA1P49639 STX1B-201ENST00000215095 4697 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
HOXA1P49639 PIM2-201ENST00000376509 2075 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
HOXA1P49639 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC12.92□□□□□ -0.34
HOXA1P49639 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC12.92□□□□□ -0.34
HOXA1P49639 ERVK13-1-207ENST00000569465 3321 ntTSL 2 BASIC12.91□□□□□ -0.34
HOXA1P49639 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
HOXA1P49639 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
HOXA1P49639 AC005324.3-201ENST00000455584 5514 ntAPPRIS P1 TSL 2 BASIC12.91□□□□□ -0.34
HOXA1P49639 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC12.91□□□□□ -0.34
HOXA1P49639 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
HOXA1P49639 ARHGAP10-201ENST00000336498 3299 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
HOXA1P49639 AL591122.2-201ENST00000624125 1853 ntBASIC12.91□□□□□ -0.34
HOXA1P49639 FFAR4-202ENST00000371483 3653 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
HOXA1P49639 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC12.91□□□□□ -0.34
HOXA1P49639 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC12.91□□□□□ -0.34
HOXA1P49639 AC004890.2-205ENST00000416232 2804 ntTSL 2 BASIC12.91□□□□□ -0.34
HOXA1P49639 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC12.91□□□□□ -0.34
HOXA1P49639 MAX-219ENST00000618858 2141 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
HOXA1P49639 EHD1-202ENST00000359393 3618 ntAPPRIS P1 TSL 2 BASIC12.91□□□□□ -0.34
HOXA1P49639 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC12.91□□□□□ -0.34
HOXA1P49639 DNAJC22-202ENST00000549441 4412 ntAPPRIS P1 TSL 2 BASIC12.91□□□□□ -0.34
HOXA1P49639 SH3BP5L-201ENST00000366472 3861 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
HOXA1P49639 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
HOXA1P49639 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
HOXA1P49639 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC12.91□□□□□ -0.34
HOXA1P49639 SMTN-203ENST00000358743 3198 ntAPPRIS P4 TSL 2 BASIC12.91□□□□□ -0.34
HOXA1P49639 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
HOXA1P49639 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC12.91□□□□□ -0.34
HOXA1P49639 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC12.91□□□□□ -0.34
HOXA1P49639 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC12.91□□□□□ -0.34
HOXA1P49639 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC12.91□□□□□ -0.34
HOXA1P49639 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC12.91□□□□□ -0.34
HOXA1P49639 VN2R19P-201ENST00000442399 1052 ntBASIC12.91□□□□□ -0.34
HOXA1P49639 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC12.91□□□□□ -0.34
HOXA1P49639 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC12.91□□□□□ -0.34
HOXA1P49639 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC12.91□□□□□ -0.34
HOXA1P49639 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
HOXA1P49639 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC12.91□□□□□ -0.34
HOXA1P49639 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC12.91□□□□□ -0.34
HOXA1P49639 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC12.91□□□□□ -0.34
HOXA1P49639 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC12.91□□□□□ -0.34
HOXA1P49639 ZBTB49-201ENST00000337872 2889 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
HOXA1P49639 CACNA1I-202ENST00000402142 10004 ntAPPRIS P4 TSL 1 (best) BASIC12.91□□□□□ -0.34
HOXA1P49639 TARDBP-201ENST00000240185 5367 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
HOXA1P49639 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
HOXA1P49639 EBLN3P-202ENST00000625445 4520 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
HOXA1P49639 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
HOXA1P49639 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC12.91□□□□□ -0.34
HOXA1P49639 API5-202ENST00000420461 2009 ntTSL 2 BASIC12.91□□□□□ -0.34
HOXA1P49639 GID4-201ENST00000268719 4237 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
HOXA1P49639 CEP131-202ENST00000374782 3505 ntAPPRIS P3 TSL 5 BASIC12.91□□□□□ -0.34
HOXA1P49639 GNPDA1-204ENST00000503794 2622 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
HOXA1P49639 NEFH-201ENST00000310624 3783 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
HOXA1P49639 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
HOXA1P49639 ZW10-201ENST00000200135 2992 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
HOXA1P49639 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC12.9□□□□□ -0.34
HOXA1P49639 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
HOXA1P49639 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
HOXA1P49639 CCT8L2-201ENST00000359963 2060 ntAPPRIS P1 BASIC12.9□□□□□ -0.34
HOXA1P49639 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms