Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 AC018629.1-201ENST00000623381 1736 ntBASIC18.03■□□□□ 0.48
COL4A5P29400 IL9RP3-201ENST00000442856 1674 ntBASIC18.03■□□□□ 0.48
COL4A5P29400 AC144522.1-201ENST00000625111 1658 ntBASIC18.03■□□□□ 0.48
COL4A5P29400 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
COL4A5P29400 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC18.03■□□□□ 0.48
COL4A5P29400 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL4A5P29400 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC18.03■□□□□ 0.48
COL4A5P29400 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC18.03■□□□□ 0.48
COL4A5P29400 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC18.03■□□□□ 0.48
COL4A5P29400 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL4A5P29400 LINC00334-203ENST00000638500 1377 ntTSL 5 BASIC18.03■□□□□ 0.48
COL4A5P29400 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC18.03■□□□□ 0.48
COL4A5P29400 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC18.03■□□□□ 0.48
COL4A5P29400 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL4A5P29400 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL4A5P29400 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL4A5P29400 TNNT2-202ENST00000360372 969 ntTSL 5 BASIC18.03■□□□□ 0.48
COL4A5P29400 TNNT2-204ENST00000367317 1050 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
COL4A5P29400 MIR1227-201ENST00000408484 88 ntBASIC18.03■□□□□ 0.48
COL4A5P29400 TNNT2-209ENST00000421663 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL4A5P29400 AL080250.1-201ENST00000438676 445 ntTSL 5 BASIC18.03■□□□□ 0.48
COL4A5P29400 TREX1-202ENST00000444177 1200 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
COL4A5P29400 AL138731.1-201ENST00000452624 739 ntTSL 3 BASIC18.03■□□□□ 0.48
COL4A5P29400 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC18.03■□□□□ 0.48
COL4A5P29400 AC108199.1-201ENST00000504249 508 ntTSL 3 BASIC18.03■□□□□ 0.48
COL4A5P29400 VDAC3-211ENST00000522572 799 ntTSL 5 BASIC18.03■□□□□ 0.48
COL4A5P29400 AL356756.1-201ENST00000550941 551 ntTSL 3 BASIC18.03■□□□□ 0.48
COL4A5P29400 AC105137.3-201ENST00000617588 984 ntBASIC18.03■□□□□ 0.48
COL4A5P29400 AC004706.3-207ENST00000634823 977 ntTSL 5 BASIC18.03■□□□□ 0.48
COL4A5P29400 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
COL4A5P29400 SPAG8-209ENST00000484764 1618 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
COL4A5P29400 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC18.02■□□□□ 0.48
COL4A5P29400 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
COL4A5P29400 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
COL4A5P29400 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
COL4A5P29400 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC18.02■□□□□ 0.48
COL4A5P29400 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
COL4A5P29400 MCC-208ENST00000514701 2855 ntTSL 2 BASIC18.02■□□□□ 0.48
COL4A5P29400 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
COL4A5P29400 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
COL4A5P29400 SVOPL-201ENST00000288513 1413 ntTSL 2 BASIC18.02■□□□□ 0.48
COL4A5P29400 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
COL4A5P29400 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC18.02■□□□□ 0.48
COL4A5P29400 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
COL4A5P29400 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
COL4A5P29400 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
COL4A5P29400 PCBP3-201ENST00000400304 1086 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
COL4A5P29400 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
COL4A5P29400 Z97652.1-201ENST00000415176 329 ntTSL 5 BASIC18.02■□□□□ 0.47
COL4A5P29400 LINC01433-201ENST00000419003 697 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
COL4A5P29400 PCBP3-208ENST00000449640 1278 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.47
COL4A5P29400 AC130709.1-201ENST00000484779 1212 ntBASIC18.02■□□□□ 0.47
COL4A5P29400 AC010234.1-201ENST00000494599 870 ntBASIC18.02■□□□□ 0.47
COL4A5P29400 AC008723.1-201ENST00000506922 207 ntBASIC18.02■□□□□ 0.47
COL4A5P29400 ALG3P1-201ENST00000508806 1114 ntBASIC18.02■□□□□ 0.47
COL4A5P29400 CCNC-217ENST00000523985 958 ntTSL 2 BASIC18.02■□□□□ 0.47
COL4A5P29400 FXYD2-205ENST00000528014 672 ntAPPRIS P1 TSL 3 BASIC18.02■□□□□ 0.47
COL4A5P29400 AC008825.2-201ENST00000603374 718 ntBASIC18.02■□□□□ 0.47
COL4A5P29400 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.47
COL4A5P29400 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC18.02■□□□□ 0.47
COL4A5P29400 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL4A5P29400 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL4A5P29400 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL4A5P29400 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
COL4A5P29400 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC18.01■□□□□ 0.47
COL4A5P29400 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC18.01■□□□□ 0.47
COL4A5P29400 ASCC2-201ENST00000307790 2793 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL4A5P29400 AC013726.1-201ENST00000563747 2285 ntBASIC18.01■□□□□ 0.47
COL4A5P29400 MAP2K6-205ENST00000589647 1512 ntTSL 5 BASIC18.01■□□□□ 0.47
COL4A5P29400 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL4A5P29400 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL4A5P29400 EWSR1-204ENST00000333395 1265 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
COL4A5P29400 RNA5SP359-201ENST00000364838 113 ntBASIC18.01■□□□□ 0.47
COL4A5P29400 AL357563.1-201ENST00000404728 395 ntBASIC18.01■□□□□ 0.47
COL4A5P29400 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
COL4A5P29400 SNCB-203ENST00000506696 552 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
COL4A5P29400 AL049833.2-202ENST00000556773 626 ntTSL 3 BASIC18.01■□□□□ 0.47
COL4A5P29400 NPTN-204ENST00000562924 1094 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
COL4A5P29400 FAM104A-204ENST00000580032 451 ntTSL 3 BASIC18.01■□□□□ 0.47
COL4A5P29400 SRSF3-208ENST00000620941 869 ntAPPRIS P1 TSL 3 BASIC18.01■□□□□ 0.47
COL4A5P29400 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL4A5P29400 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
COL4A5P29400 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
COL4A5P29400 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL4A5P29400 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC18.01■□□□□ 0.47
COL4A5P29400 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
COL4A5P29400 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC18.01■□□□□ 0.47
COL4A5P29400 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL4A5P29400 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC18.01■□□□□ 0.47
COL4A5P29400 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC18.01■□□□□ 0.47
COL4A5P29400 API5-202ENST00000420461 2009 ntTSL 2 BASIC18.01■□□□□ 0.47
COL4A5P29400 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL4A5P29400 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
COL4A5P29400 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
COL4A5P29400 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC18■□□□□ 0.47
COL4A5P29400 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC18■□□□□ 0.47
COL4A5P29400 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
COL4A5P29400 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
COL4A5P29400 CGB1-201ENST00000301407 573 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
COL4A5P29400 RAB25-201ENST00000361084 1110 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 72.1 ms