Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 PPIE-202ENST00000356511 1079 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
COL5A3P25940 AL109767.1-201ENST00000429450 564 ntTSL 4 BASIC18.88■□□□□ 0.61
COL5A3P25940 RPL8P2-201ENST00000430538 502 ntBASIC18.88■□□□□ 0.61
COL5A3P25940 PTPA-215ENST00000432124 567 ntTSL 4 BASIC18.88■□□□□ 0.61
COL5A3P25940 HCFC1-AS1-201ENST00000438219 350 ntTSL 3 BASIC18.88■□□□□ 0.61
COL5A3P25940 AC093484.1-201ENST00000441875 477 ntTSL 5 BASIC18.88■□□□□ 0.61
COL5A3P25940 RN7SL81P-201ENST00000493781 261 ntBASIC18.88■□□□□ 0.61
COL5A3P25940 MRPL22P1-201ENST00000505398 616 ntBASIC18.88■□□□□ 0.61
COL5A3P25940 OSMR-AS1-202ENST00000512519 837 ntTSL 2 BASIC18.88■□□□□ 0.61
COL5A3P25940 AC129507.4-201ENST00000570501 411 ntTSL 2 BASIC18.88■□□□□ 0.61
COL5A3P25940 LINC00923-205ENST00000615399 932 ntTSL 5 BASIC18.88■□□□□ 0.61
COL5A3P25940 AC073911.3-201ENST00000624401 631 ntBASIC18.88■□□□□ 0.61
COL5A3P25940 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL5A3P25940 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC18.88■□□□□ 0.61
COL5A3P25940 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL5A3P25940 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC18.88■□□□□ 0.61
COL5A3P25940 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
COL5A3P25940 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC18.88■□□□□ 0.61
COL5A3P25940 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL5A3P25940 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC18.88■□□□□ 0.61
COL5A3P25940 C3orf33-205ENST00000534941 1804 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL5A3P25940 CRB3-201ENST00000308243 631 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
COL5A3P25940 S100A2-203ENST00000368709 457 ntAPPRIS P1 TSL 3 BASIC18.88■□□□□ 0.61
COL5A3P25940 Z99943.1-201ENST00000451545 718 ntTSL 3 BASIC18.88■□□□□ 0.61
COL5A3P25940 CCNC-217ENST00000523985 958 ntTSL 2 BASIC18.88■□□□□ 0.61
COL5A3P25940 LTBR-209ENST00000541102 1084 ntTSL 5 BASIC18.88■□□□□ 0.61
COL5A3P25940 TMEM231-206ENST00000565067 1078 ntTSL 5 BASIC18.88■□□□□ 0.61
COL5A3P25940 AC084781.1-201ENST00000613737 656 ntBASIC18.88■□□□□ 0.61
COL5A3P25940 FXYD6-FXYD2-202ENST00000614497 634 ntAPPRIS P1 TSL 3 BASIC18.88■□□□□ 0.61
COL5A3P25940 C15orf59-AS1-202ENST00000615095 1224 ntTSL 5 BASIC18.88■□□□□ 0.61
COL5A3P25940 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC18.88■□□□□ 0.61
COL5A3P25940 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
COL5A3P25940 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL5A3P25940 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL5A3P25940 ZDHHC4-204ENST00000396709 1485 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
COL5A3P25940 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC18.87■□□□□ 0.61
COL5A3P25940 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC18.87■□□□□ 0.61
COL5A3P25940 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC18.87■□□□□ 0.61
COL5A3P25940 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC18.87■□□□□ 0.61
COL5A3P25940 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC18.87■□□□□ 0.61
COL5A3P25940 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
COL5A3P25940 OSER1-201ENST00000255174 1572 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL5A3P25940 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
COL5A3P25940 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL5A3P25940 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL5A3P25940 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC18.87■□□□□ 0.61
COL5A3P25940 AC012360.1-201ENST00000433219 674 ntTSL 5 BASIC18.87■□□□□ 0.61
COL5A3P25940 AL591242.1-203ENST00000434329 374 ntTSL 3 BASIC18.87■□□□□ 0.61
COL5A3P25940 AC092535.3-201ENST00000504969 468 ntTSL 3 BASIC18.87■□□□□ 0.61
COL5A3P25940 AP000842.2-201ENST00000533033 517 ntTSL 4 BASIC18.87■□□□□ 0.61
COL5A3P25940 AC025154.2-201ENST00000550530 445 ntTSL 3 BASIC18.87■□□□□ 0.61
COL5A3P25940 AL031713.1-201ENST00000564813 661 ntBASIC18.87■□□□□ 0.61
COL5A3P25940 AC145207.3-201ENST00000576784 529 ntTSL 5 BASIC18.87■□□□□ 0.61
COL5A3P25940 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL5A3P25940 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL5A3P25940 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL5A3P25940 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC18.87■□□□□ 0.61
COL5A3P25940 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL5A3P25940 ENO3-202ENST00000518175 1448 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL5A3P25940 VWCE-205ENST00000535710 1437 ntTSL 2 BASIC18.87■□□□□ 0.61
COL5A3P25940 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
COL5A3P25940 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL5A3P25940 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL5A3P25940 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL5A3P25940 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC18.87■□□□□ 0.61
COL5A3P25940 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL5A3P25940 LINC00513-201ENST00000447430 1616 ntTSL 5 BASIC18.87■□□□□ 0.61
COL5A3P25940 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL5A3P25940 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
COL5A3P25940 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL5A3P25940 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL5A3P25940 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC18.86■□□□□ 0.61
COL5A3P25940 AC087481.3-201ENST00000602886 1894 ntBASIC18.86■□□□□ 0.61
COL5A3P25940 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL5A3P25940 RPP25L-202ENST00000378959 888 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL5A3P25940 SAPCD1-208ENST00000415669 916 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL5A3P25940 VEGFB-202ENST00000426086 979 ntAPPRIS ALT1 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL5A3P25940 HLA-DQB2-232ENST00000437316 1214 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
COL5A3P25940 PFN2-206ENST00000461930 606 ntTSL 4 BASIC18.86■□□□□ 0.61
COL5A3P25940 NCK1-AS1-203ENST00000474250 827 ntTSL 2 BASIC18.86■□□□□ 0.61
COL5A3P25940 AC008723.1-201ENST00000506922 207 ntBASIC18.86■□□□□ 0.61
COL5A3P25940 MSRB3-206ENST00000535664 964 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL5A3P25940 ATP6V1D-206ENST00000554236 888 ntTSL 5 BASIC18.86■□□□□ 0.61
COL5A3P25940 NPTN-204ENST00000562924 1094 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
COL5A3P25940 PRSS45-202ENST00000620911 1041 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
COL5A3P25940 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
COL5A3P25940 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
COL5A3P25940 FAM151A-202ENST00000371304 1444 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
COL5A3P25940 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
COL5A3P25940 RAN-210ENST00000541630 1475 ntTSL 2 BASIC18.86■□□□□ 0.61
COL5A3P25940 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
COL5A3P25940 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL5A3P25940 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL5A3P25940 AR-207ENST00000612010 3896 ntTSL 5 BASIC18.86■□□□□ 0.61
COL5A3P25940 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL5A3P25940 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
COL5A3P25940 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL5A3P25940 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL5A3P25940 AL627231.1-201ENST00000394467 1125 ntBASIC18.86■□□□□ 0.61
COL5A3P25940 HDDC2-202ENST00000398153 918 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms