Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
MSH3P20585 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC15.41■□□□□ 0.06
MSH3P20585 ADAMTS2-201ENST00000251582 6754 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
MSH3P20585 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC15.41■□□□□ 0.06
MSH3P20585 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
MSH3P20585 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
MSH3P20585 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
MSH3P20585 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC15.41■□□□□ 0.06
MSH3P20585 MFF-204ENST00000353339 2186 ntTSL 5 BASIC15.41■□□□□ 0.06
MSH3P20585 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC15.41■□□□□ 0.06
MSH3P20585 ZFP30-201ENST00000351218 6090 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
MSH3P20585 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC15.4■□□□□ 0.06
MSH3P20585 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
MSH3P20585 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
MSH3P20585 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC15.4■□□□□ 0.06
MSH3P20585 AL161772.1-201ENST00000610494 4412 ntBASIC15.4■□□□□ 0.06
MSH3P20585 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC15.4■□□□□ 0.06
MSH3P20585 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC15.4■□□□□ 0.06
MSH3P20585 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
MSH3P20585 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
MSH3P20585 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC15.4■□□□□ 0.06
MSH3P20585 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
MSH3P20585 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
MSH3P20585 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC15.4■□□□□ 0.06
MSH3P20585 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC15.4■□□□□ 0.06
MSH3P20585 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
MSH3P20585 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
MSH3P20585 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC15.4■□□□□ 0.06
MSH3P20585 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
MSH3P20585 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC15.4■□□□□ 0.06
MSH3P20585 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
MSH3P20585 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
MSH3P20585 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC15.4■□□□□ 0.06
MSH3P20585 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC15.4■□□□□ 0.06
MSH3P20585 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
MSH3P20585 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC15.4■□□□□ 0.06
MSH3P20585 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
MSH3P20585 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
MSH3P20585 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC15.4■□□□□ 0.06
MSH3P20585 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
MSH3P20585 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC15.4■□□□□ 0.06
MSH3P20585 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC15.4■□□□□ 0.06
MSH3P20585 AC123567.1-201ENST00000548294 1261 ntBASIC15.4■□□□□ 0.06
MSH3P20585 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC15.4■□□□□ 0.06
MSH3P20585 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
MSH3P20585 TBCB-211ENST00000589996 724 ntTSL 3 BASIC15.4■□□□□ 0.06
MSH3P20585 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC15.4■□□□□ 0.06
MSH3P20585 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
MSH3P20585 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
MSH3P20585 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
MSH3P20585 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC15.4■□□□□ 0.06
MSH3P20585 LRRK1-201ENST00000388948 7671 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
MSH3P20585 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC15.4■□□□□ 0.06
MSH3P20585 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
MSH3P20585 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
MSH3P20585 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
MSH3P20585 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
MSH3P20585 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC15.4■□□□□ 0.06
MSH3P20585 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
MSH3P20585 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC15.4■□□□□ 0.06
MSH3P20585 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
MSH3P20585 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
MSH3P20585 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC15.4■□□□□ 0.06
MSH3P20585 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC15.4■□□□□ 0.06
MSH3P20585 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
MSH3P20585 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC15.4■□□□□ 0.06
MSH3P20585 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
MSH3P20585 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
MSH3P20585 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC15.4■□□□□ 0.06
MSH3P20585 API5-202ENST00000420461 2009 ntTSL 2 BASIC15.39■□□□□ 0.05
MSH3P20585 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
MSH3P20585 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC15.39■□□□□ 0.05
MSH3P20585 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC15.39■□□□□ 0.05
MSH3P20585 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC15.39■□□□□ 0.05
MSH3P20585 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC15.39■□□□□ 0.05
MSH3P20585 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
MSH3P20585 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
MSH3P20585 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
MSH3P20585 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
MSH3P20585 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
MSH3P20585 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC15.39■□□□□ 0.05
MSH3P20585 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
MSH3P20585 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
MSH3P20585 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC15.39■□□□□ 0.05
MSH3P20585 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
MSH3P20585 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
MSH3P20585 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
MSH3P20585 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
MSH3P20585 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
MSH3P20585 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC15.39■□□□□ 0.05
MSH3P20585 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC15.39■□□□□ 0.05
MSH3P20585 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC15.39■□□□□ 0.05
MSH3P20585 API5-211ENST00000534695 560 ntTSL 5 BASIC15.39■□□□□ 0.05
MSH3P20585 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC15.39■□□□□ 0.05
MSH3P20585 AC140912.1-201ENST00000577171 1054 ntBASIC15.39■□□□□ 0.05
MSH3P20585 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC15.39■□□□□ 0.05
MSH3P20585 CHCHD2P3-201ENST00000603038 451 ntBASIC15.39■□□□□ 0.05
MSH3P20585 AC007431.3-201ENST00000623221 587 ntBASIC15.39■□□□□ 0.05
MSH3P20585 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
MSH3P20585 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 53.1 ms