Protein–RNA interactions for Protein: Q9P0J7

KCMF1, E3 ubiquitin-protein ligase KCMF1, humanhuman

Predictions only

Length 381 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KCMF1Q9P0J7 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
KCMF1Q9P0J7 GAPDHP40-201ENST00000505218 1006 ntBASIC14.67□□□□□ -0.06
KCMF1Q9P0J7 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC14.67□□□□□ -0.06
KCMF1Q9P0J7 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC14.67□□□□□ -0.06
KCMF1Q9P0J7 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC14.67□□□□□ -0.06
KCMF1Q9P0J7 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC14.67□□□□□ -0.06
KCMF1Q9P0J7 CDK4-206ENST00000549606 558 ntTSL 2 BASIC14.67□□□□□ -0.06
KCMF1Q9P0J7 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC14.67□□□□□ -0.06
KCMF1Q9P0J7 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC14.67□□□□□ -0.06
KCMF1Q9P0J7 AL645728.2-202ENST00000641679 227 ntBASIC14.67□□□□□ -0.06
KCMF1Q9P0J7 AC105233.6-201ENST00000642093 218 ntBASIC14.67□□□□□ -0.06
KCMF1Q9P0J7 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
KCMF1Q9P0J7 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
KCMF1Q9P0J7 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
KCMF1Q9P0J7 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
KCMF1Q9P0J7 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
KCMF1Q9P0J7 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC14.67□□□□□ -0.06
KCMF1Q9P0J7 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
KCMF1Q9P0J7 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
KCMF1Q9P0J7 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
KCMF1Q9P0J7 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
KCMF1Q9P0J7 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
KCMF1Q9P0J7 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC14.67□□□□□ -0.06
KCMF1Q9P0J7 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
KCMF1Q9P0J7 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
KCMF1Q9P0J7 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
KCMF1Q9P0J7 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
KCMF1Q9P0J7 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
KCMF1Q9P0J7 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
KCMF1Q9P0J7 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
KCMF1Q9P0J7 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
KCMF1Q9P0J7 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
KCMF1Q9P0J7 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC14.66□□□□□ -0.06
KCMF1Q9P0J7 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC14.66□□□□□ -0.06
KCMF1Q9P0J7 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC14.66□□□□□ -0.06
KCMF1Q9P0J7 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
KCMF1Q9P0J7 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
KCMF1Q9P0J7 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC14.66□□□□□ -0.06
KCMF1Q9P0J7 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
KCMF1Q9P0J7 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
KCMF1Q9P0J7 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
KCMF1Q9P0J7 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
KCMF1Q9P0J7 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
KCMF1Q9P0J7 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC14.66□□□□□ -0.06
KCMF1Q9P0J7 EDF1-203ENST00000371649 790 ntTSL 2 BASIC14.66□□□□□ -0.06
KCMF1Q9P0J7 AC098850.1-201ENST00000419919 790 ntBASIC14.66□□□□□ -0.06
KCMF1Q9P0J7 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC14.66□□□□□ -0.06
KCMF1Q9P0J7 PNKD-204ENST00000436005 978 ntTSL 5 BASIC14.66□□□□□ -0.06
KCMF1Q9P0J7 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC14.66□□□□□ -0.06
KCMF1Q9P0J7 PFN2-205ENST00000461868 613 ntTSL 2 BASIC14.66□□□□□ -0.06
KCMF1Q9P0J7 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC14.66□□□□□ -0.06
KCMF1Q9P0J7 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC14.66□□□□□ -0.06
KCMF1Q9P0J7 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC14.66□□□□□ -0.06
KCMF1Q9P0J7 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC14.66□□□□□ -0.06
KCMF1Q9P0J7 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC14.66□□□□□ -0.06
KCMF1Q9P0J7 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
KCMF1Q9P0J7 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
KCMF1Q9P0J7 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
KCMF1Q9P0J7 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
KCMF1Q9P0J7 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
KCMF1Q9P0J7 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC14.66□□□□□ -0.06
KCMF1Q9P0J7 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
KCMF1Q9P0J7 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
KCMF1Q9P0J7 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
KCMF1Q9P0J7 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
KCMF1Q9P0J7 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
KCMF1Q9P0J7 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC14.66□□□□□ -0.06
KCMF1Q9P0J7 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
KCMF1Q9P0J7 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
KCMF1Q9P0J7 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
KCMF1Q9P0J7 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
KCMF1Q9P0J7 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
KCMF1Q9P0J7 AC006486.2-201ENST00000624246 2199 ntBASIC14.66□□□□□ -0.06
KCMF1Q9P0J7 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
KCMF1Q9P0J7 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
KCMF1Q9P0J7 AP002414.2-201ENST00000591780 3365 ntBASIC14.65□□□□□ -0.06
KCMF1Q9P0J7 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
KCMF1Q9P0J7 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
KCMF1Q9P0J7 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
KCMF1Q9P0J7 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
KCMF1Q9P0J7 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC14.65□□□□□ -0.06
KCMF1Q9P0J7 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
KCMF1Q9P0J7 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
KCMF1Q9P0J7 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
KCMF1Q9P0J7 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC14.65□□□□□ -0.06
KCMF1Q9P0J7 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
KCMF1Q9P0J7 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
KCMF1Q9P0J7 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
KCMF1Q9P0J7 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC14.65□□□□□ -0.06
KCMF1Q9P0J7 AC087499.6-201ENST00000411576 835 ntBASIC14.65□□□□□ -0.06
KCMF1Q9P0J7 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC14.65□□□□□ -0.06
KCMF1Q9P0J7 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC14.65□□□□□ -0.06
KCMF1Q9P0J7 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC14.65□□□□□ -0.06
KCMF1Q9P0J7 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
KCMF1Q9P0J7 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
KCMF1Q9P0J7 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC14.65□□□□□ -0.06
KCMF1Q9P0J7 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC14.65□□□□□ -0.06
KCMF1Q9P0J7 BRI3BPP1-201ENST00000594224 787 ntBASIC14.65□□□□□ -0.06
KCMF1Q9P0J7 AC027307.3-201ENST00000594262 1100 ntBASIC14.65□□□□□ -0.06
KCMF1Q9P0J7 AC093726.1-201ENST00000608064 963 ntBASIC14.65□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 93.9 ms