Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
LINC00477Q96M19 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC11.64□□□□□ -0.55
LINC00477Q96M19 RUFY1-202ENST00000393438 2454 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
LINC00477Q96M19 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
LINC00477Q96M19 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
LINC00477Q96M19 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
LINC00477Q96M19 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
LINC00477Q96M19 CCDC88A-201ENST00000263630 9667 ntAPPRIS P3 TSL 1 (best) BASIC11.64□□□□□ -0.55
LINC00477Q96M19 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC11.64□□□□□ -0.55
LINC00477Q96M19 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC11.64□□□□□ -0.55
LINC00477Q96M19 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
LINC00477Q96M19 TRAF1-201ENST00000373887 6324 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
LINC00477Q96M19 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC11.64□□□□□ -0.55
LINC00477Q96M19 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC11.64□□□□□ -0.55
LINC00477Q96M19 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
LINC00477Q96M19 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
LINC00477Q96M19 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
LINC00477Q96M19 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC11.64□□□□□ -0.55
LINC00477Q96M19 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
LINC00477Q96M19 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC11.64□□□□□ -0.55
LINC00477Q96M19 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC11.64□□□□□ -0.55
LINC00477Q96M19 HIST3H2BA-201ENST00000436555 524 ntBASIC11.64□□□□□ -0.55
LINC00477Q96M19 RBPMS2P1-201ENST00000437762 623 ntBASIC11.64□□□□□ -0.55
LINC00477Q96M19 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC11.64□□□□□ -0.55
LINC00477Q96M19 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC11.64□□□□□ -0.55
LINC00477Q96M19 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC11.64□□□□□ -0.55
LINC00477Q96M19 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC11.64□□□□□ -0.55
LINC00477Q96M19 PUS1-205ENST00000535067 838 ntTSL 3 BASIC11.64□□□□□ -0.55
LINC00477Q96M19 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC11.64□□□□□ -0.55
LINC00477Q96M19 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC11.64□□□□□ -0.55
LINC00477Q96M19 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
LINC00477Q96M19 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC11.64□□□□□ -0.55
LINC00477Q96M19 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
LINC00477Q96M19 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC11.64□□□□□ -0.55
LINC00477Q96M19 AL513210.1-201ENST00000629608 234 ntBASIC11.64□□□□□ -0.55
LINC00477Q96M19 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
LINC00477Q96M19 C4B-201ENST00000425700 5237 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
LINC00477Q96M19 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC11.64□□□□□ -0.55
LINC00477Q96M19 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC11.64□□□□□ -0.55
LINC00477Q96M19 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC11.64□□□□□ -0.55
LINC00477Q96M19 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC11.64□□□□□ -0.55
LINC00477Q96M19 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
LINC00477Q96M19 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
LINC00477Q96M19 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC11.64□□□□□ -0.55
LINC00477Q96M19 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
LINC00477Q96M19 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC11.64□□□□□ -0.55
LINC00477Q96M19 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
LINC00477Q96M19 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC11.64□□□□□ -0.55
LINC00477Q96M19 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC11.64□□□□□ -0.55
LINC00477Q96M19 AL390755.1-201ENST00000623716 2027 ntBASIC11.64□□□□□ -0.55
LINC00477Q96M19 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC11.64□□□□□ -0.55
LINC00477Q96M19 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC11.64□□□□□ -0.55
LINC00477Q96M19 SRD5A3-201ENST00000264228 4190 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
LINC00477Q96M19 AATBC-201ENST00000400385 4598 ntTSL 2 BASIC11.64□□□□□ -0.55
LINC00477Q96M19 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC11.63□□□□□ -0.55
LINC00477Q96M19 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
LINC00477Q96M19 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC11.63□□□□□ -0.55
LINC00477Q96M19 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC11.63□□□□□ -0.55
LINC00477Q96M19 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC11.63□□□□□ -0.55
LINC00477Q96M19 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
LINC00477Q96M19 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC11.63□□□□□ -0.55
LINC00477Q96M19 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
LINC00477Q96M19 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
LINC00477Q96M19 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC11.63□□□□□ -0.55
LINC00477Q96M19 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
LINC00477Q96M19 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
LINC00477Q96M19 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC11.63□□□□□ -0.55
LINC00477Q96M19 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
LINC00477Q96M19 C1R-202ENST00000536053 2347 ntTSL 2 BASIC11.63□□□□□ -0.55
LINC00477Q96M19 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC11.63□□□□□ -0.55
LINC00477Q96M19 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
LINC00477Q96M19 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC11.63□□□□□ -0.55
LINC00477Q96M19 AXL-201ENST00000301178 4737 ntAPPRIS P4 TSL 1 (best) BASIC11.63□□□□□ -0.55
LINC00477Q96M19 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC11.63□□□□□ -0.55
LINC00477Q96M19 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
LINC00477Q96M19 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
LINC00477Q96M19 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC11.63□□□□□ -0.55
LINC00477Q96M19 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC11.63□□□□□ -0.55
LINC00477Q96M19 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC11.63□□□□□ -0.55
LINC00477Q96M19 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC11.63□□□□□ -0.55
LINC00477Q96M19 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
LINC00477Q96M19 FABP5-202ENST00000396359 986 ntTSL 5 BASIC11.63□□□□□ -0.55
LINC00477Q96M19 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC11.63□□□□□ -0.55
LINC00477Q96M19 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
LINC00477Q96M19 AL627223.1-201ENST00000416693 442 ntBASIC11.63□□□□□ -0.55
LINC00477Q96M19 TARDBPP1-201ENST00000442013 1203 ntBASIC11.63□□□□□ -0.55
LINC00477Q96M19 USP40-206ENST00000443711 628 ntTSL 2 BASIC11.63□□□□□ -0.55
LINC00477Q96M19 SERBP1P3-201ENST00000459980 809 ntBASIC11.63□□□□□ -0.55
LINC00477Q96M19 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC11.63□□□□□ -0.55
LINC00477Q96M19 POLD2P1-201ENST00000511220 997 ntBASIC11.63□□□□□ -0.55
LINC00477Q96M19 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC11.63□□□□□ -0.55
LINC00477Q96M19 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC11.63□□□□□ -0.55
LINC00477Q96M19 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
LINC00477Q96M19 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC11.63□□□□□ -0.55
LINC00477Q96M19 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC11.63□□□□□ -0.55
LINC00477Q96M19 BANF1P1-201ENST00000553684 263 ntBASIC11.63□□□□□ -0.55
LINC00477Q96M19 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC11.63□□□□□ -0.55
LINC00477Q96M19 AC011467.4-201ENST00000594891 528 ntBASIC11.63□□□□□ -0.55
LINC00477Q96M19 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC11.63□□□□□ -0.55
LINC00477Q96M19 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC11.63□□□□□ -0.55
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms