Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC14.91□□□□□ -0.02
CLHC1Q8NHS4 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC14.91□□□□□ -0.02
CLHC1Q8NHS4 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC14.91□□□□□ -0.02
CLHC1Q8NHS4 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC14.91□□□□□ -0.02
CLHC1Q8NHS4 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC14.91□□□□□ -0.02
CLHC1Q8NHS4 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CLHC1Q8NHS4 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC14.91□□□□□ -0.02
CLHC1Q8NHS4 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC14.91□□□□□ -0.02
CLHC1Q8NHS4 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC14.91□□□□□ -0.02
CLHC1Q8NHS4 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CLHC1Q8NHS4 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC14.91□□□□□ -0.02
CLHC1Q8NHS4 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC14.91□□□□□ -0.02
CLHC1Q8NHS4 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC14.91□□□□□ -0.02
CLHC1Q8NHS4 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
CLHC1Q8NHS4 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC14.91□□□□□ -0.02
CLHC1Q8NHS4 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
CLHC1Q8NHS4 SEMA4F-210ENST00000611975 6007 ntTSL 5 BASIC14.91□□□□□ -0.02
CLHC1Q8NHS4 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CLHC1Q8NHS4 FGD5P1-202ENST00000614866 2498 ntBASIC14.91□□□□□ -0.02
CLHC1Q8NHS4 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC14.91□□□□□ -0.02
CLHC1Q8NHS4 AC013726.1-201ENST00000563747 2285 ntBASIC14.91□□□□□ -0.02
CLHC1Q8NHS4 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
CLHC1Q8NHS4 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CLHC1Q8NHS4 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
CLHC1Q8NHS4 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CLHC1Q8NHS4 LINC01101-201ENST00000622953 1884 ntBASIC14.91□□□□□ -0.02
CLHC1Q8NHS4 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC14.91□□□□□ -0.02
CLHC1Q8NHS4 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
CLHC1Q8NHS4 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC14.9□□□□□ -0.02
CLHC1Q8NHS4 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC14.9□□□□□ -0.02
CLHC1Q8NHS4 AC139749.1-202ENST00000617529 3139 ntBASIC14.9□□□□□ -0.02
CLHC1Q8NHS4 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
CLHC1Q8NHS4 LINC00552-201ENST00000625151 2579 ntBASIC14.9□□□□□ -0.02
CLHC1Q8NHS4 ZBED1P1-201ENST00000502364 1930 ntBASIC14.9□□□□□ -0.02
CLHC1Q8NHS4 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC14.9□□□□□ -0.02
CLHC1Q8NHS4 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
CLHC1Q8NHS4 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CLHC1Q8NHS4 RDX-218ENST00000544551 4117 ntTSL 2 BASIC14.9□□□□□ -0.02
CLHC1Q8NHS4 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC14.9□□□□□ -0.02
CLHC1Q8NHS4 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CLHC1Q8NHS4 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
CLHC1Q8NHS4 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC14.9□□□□□ -0.02
CLHC1Q8NHS4 SPTLC2-201ENST00000216484 8170 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CLHC1Q8NHS4 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
CLHC1Q8NHS4 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CLHC1Q8NHS4 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
CLHC1Q8NHS4 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC14.9□□□□□ -0.02
CLHC1Q8NHS4 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC14.9□□□□□ -0.02
CLHC1Q8NHS4 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC14.9□□□□□ -0.02
CLHC1Q8NHS4 KRT18P64-201ENST00000434946 1219 ntBASIC14.9□□□□□ -0.02
CLHC1Q8NHS4 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC14.9□□□□□ -0.02
CLHC1Q8NHS4 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
CLHC1Q8NHS4 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC14.9□□□□□ -0.02
CLHC1Q8NHS4 CMC2-214ENST00000565925 640 ntTSL 5 BASIC14.9□□□□□ -0.02
CLHC1Q8NHS4 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC14.9□□□□□ -0.02
CLHC1Q8NHS4 PRR29-209ENST00000582540 967 ntTSL 2 BASIC14.9□□□□□ -0.02
CLHC1Q8NHS4 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC14.9□□□□□ -0.02
CLHC1Q8NHS4 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CLHC1Q8NHS4 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
CLHC1Q8NHS4 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CLHC1Q8NHS4 FUK-201ENST00000288078 4081 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CLHC1Q8NHS4 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC14.9□□□□□ -0.02
CLHC1Q8NHS4 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
CLHC1Q8NHS4 UNC13B-201ENST00000378495 6303 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
CLHC1Q8NHS4 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
CLHC1Q8NHS4 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC14.9□□□□□ -0.02
CLHC1Q8NHS4 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CLHC1Q8NHS4 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC14.9□□□□□ -0.02
CLHC1Q8NHS4 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
CLHC1Q8NHS4 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CLHC1Q8NHS4 ZBED1-202ENST00000381222 4507 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CLHC1Q8NHS4 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC14.9□□□□□ -0.02
CLHC1Q8NHS4 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CLHC1Q8NHS4 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC14.9□□□□□ -0.02
CLHC1Q8NHS4 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CLHC1Q8NHS4 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC14.9□□□□□ -0.02
CLHC1Q8NHS4 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC14.9□□□□□ -0.02
CLHC1Q8NHS4 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC14.9□□□□□ -0.02
CLHC1Q8NHS4 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
CLHC1Q8NHS4 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
CLHC1Q8NHS4 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
CLHC1Q8NHS4 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC14.9□□□□□ -0.02
CLHC1Q8NHS4 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
CLHC1Q8NHS4 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC14.9□□□□□ -0.02
CLHC1Q8NHS4 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC14.9□□□□□ -0.02
CLHC1Q8NHS4 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC14.89□□□□□ -0.03
CLHC1Q8NHS4 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
CLHC1Q8NHS4 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC14.89□□□□□ -0.03
CLHC1Q8NHS4 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC14.89□□□□□ -0.03
CLHC1Q8NHS4 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CLHC1Q8NHS4 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC14.89□□□□□ -0.03
CLHC1Q8NHS4 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CLHC1Q8NHS4 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC14.89□□□□□ -0.03
CLHC1Q8NHS4 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC14.89□□□□□ -0.03
CLHC1Q8NHS4 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC14.89□□□□□ -0.03
CLHC1Q8NHS4 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CLHC1Q8NHS4 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC14.89□□□□□ -0.03
CLHC1Q8NHS4 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC14.89□□□□□ -0.03
CLHC1Q8NHS4 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC14.89□□□□□ -0.03
CLHC1Q8NHS4 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms