Protein–RNA interactions for Protein: Q86TL0

ATG4D, Cysteine protease ATG4D, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4DQ86TL0 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
ATG4DQ86TL0 LINC01101-201ENST00000622953 1884 ntBASIC14.01□□□□□ -0.17
ATG4DQ86TL0 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
ATG4DQ86TL0 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
ATG4DQ86TL0 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
ATG4DQ86TL0 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
ATG4DQ86TL0 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC14.01□□□□□ -0.17
ATG4DQ86TL0 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
ATG4DQ86TL0 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
ATG4DQ86TL0 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
ATG4DQ86TL0 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
ATG4DQ86TL0 AC012508.2-201ENST00000567613 1472 ntBASIC14.01□□□□□ -0.17
ATG4DQ86TL0 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
ATG4DQ86TL0 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
ATG4DQ86TL0 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC14.01□□□□□ -0.17
ATG4DQ86TL0 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
ATG4DQ86TL0 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
ATG4DQ86TL0 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
ATG4DQ86TL0 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
ATG4DQ86TL0 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
ATG4DQ86TL0 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC14.01□□□□□ -0.17
ATG4DQ86TL0 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC14.01□□□□□ -0.17
ATG4DQ86TL0 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC14.01□□□□□ -0.17
ATG4DQ86TL0 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
ATG4DQ86TL0 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC14.01□□□□□ -0.17
ATG4DQ86TL0 REEP4-207ENST00000523293 913 ntTSL 3 BASIC14.01□□□□□ -0.17
ATG4DQ86TL0 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC14.01□□□□□ -0.17
ATG4DQ86TL0 RBM7-207ENST00000544582 692 ntTSL 3 BASIC14.01□□□□□ -0.17
ATG4DQ86TL0 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC14.01□□□□□ -0.17
ATG4DQ86TL0 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC14.01□□□□□ -0.17
ATG4DQ86TL0 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
ATG4DQ86TL0 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC14.01□□□□□ -0.17
ATG4DQ86TL0 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC14.01□□□□□ -0.17
ATG4DQ86TL0 RNA5-8SN1-201ENST00000610460 153 ntBASIC14.01□□□□□ -0.17
ATG4DQ86TL0 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
ATG4DQ86TL0 RNA5-8SN5-202ENST00000612463 153 ntBASIC14.01□□□□□ -0.17
ATG4DQ86TL0 AC009118.2-201ENST00000613275 655 ntBASIC14.01□□□□□ -0.17
ATG4DQ86TL0 RNA5-8SN4-201ENST00000613359 153 ntBASIC14.01□□□□□ -0.17
ATG4DQ86TL0 RNA5-8SN5-201ENST00000619471 153 ntBASIC14.01□□□□□ -0.17
ATG4DQ86TL0 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC14.01□□□□□ -0.17
ATG4DQ86TL0 SERF2-217ENST00000630046 862 ntTSL 5 BASIC14.01□□□□□ -0.17
ATG4DQ86TL0 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC14.01□□□□□ -0.17
ATG4DQ86TL0 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
ATG4DQ86TL0 CICP24-201ENST00000605464 2705 ntBASIC14.01□□□□□ -0.17
ATG4DQ86TL0 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
ATG4DQ86TL0 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
ATG4DQ86TL0 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
ATG4DQ86TL0 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
ATG4DQ86TL0 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
ATG4DQ86TL0 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
ATG4DQ86TL0 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
ATG4DQ86TL0 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
ATG4DQ86TL0 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
ATG4DQ86TL0 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
ATG4DQ86TL0 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC14□□□□□ -0.17
ATG4DQ86TL0 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
ATG4DQ86TL0 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC14□□□□□ -0.17
ATG4DQ86TL0 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC14□□□□□ -0.17
ATG4DQ86TL0 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
ATG4DQ86TL0 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC14□□□□□ -0.17
ATG4DQ86TL0 REXO1L2P-201ENST00000425429 2069 ntBASIC14□□□□□ -0.17
ATG4DQ86TL0 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC14□□□□□ -0.17
ATG4DQ86TL0 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
ATG4DQ86TL0 ACE3P-201ENST00000423435 1973 ntBASIC14□□□□□ -0.17
ATG4DQ86TL0 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
ATG4DQ86TL0 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
ATG4DQ86TL0 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC14□□□□□ -0.17
ATG4DQ86TL0 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
ATG4DQ86TL0 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC14□□□□□ -0.17
ATG4DQ86TL0 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC14□□□□□ -0.17
ATG4DQ86TL0 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC14□□□□□ -0.17
ATG4DQ86TL0 GAPDHP40-201ENST00000505218 1006 ntBASIC14□□□□□ -0.17
ATG4DQ86TL0 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC14□□□□□ -0.17
ATG4DQ86TL0 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC14□□□□□ -0.17
ATG4DQ86TL0 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC14□□□□□ -0.17
ATG4DQ86TL0 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC14□□□□□ -0.17
ATG4DQ86TL0 RARRES2P5-201ENST00000564013 466 ntBASIC14□□□□□ -0.17
ATG4DQ86TL0 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC14□□□□□ -0.17
ATG4DQ86TL0 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
ATG4DQ86TL0 AC004233.3-201ENST00000607794 1269 ntBASIC14□□□□□ -0.17
ATG4DQ86TL0 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC14□□□□□ -0.17
ATG4DQ86TL0 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
ATG4DQ86TL0 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
ATG4DQ86TL0 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC14□□□□□ -0.17
ATG4DQ86TL0 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
ATG4DQ86TL0 AC013726.1-201ENST00000563747 2285 ntBASIC14□□□□□ -0.17
ATG4DQ86TL0 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC14□□□□□ -0.17
ATG4DQ86TL0 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC14□□□□□ -0.17
ATG4DQ86TL0 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
ATG4DQ86TL0 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
ATG4DQ86TL0 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC14□□□□□ -0.17
ATG4DQ86TL0 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC14□□□□□ -0.17
ATG4DQ86TL0 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
ATG4DQ86TL0 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
ATG4DQ86TL0 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
ATG4DQ86TL0 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC14□□□□□ -0.17
ATG4DQ86TL0 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC14□□□□□ -0.17
ATG4DQ86TL0 AJ011931.1-201ENST00000618749 2492 ntBASIC14□□□□□ -0.17
ATG4DQ86TL0 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
ATG4DQ86TL0 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 53.3 ms