Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 AC006455.8-201ENST00000451381 351 ntTSL 3 BASIC18.06■□□□□ 0.48
COL4A5P29400 APOC1P1-201ENST00000507983 630 ntTSL 4 BASIC18.06■□□□□ 0.48
COL4A5P29400 PLEKHA8P1-203ENST00000545609 277 ntTSL 3 BASIC18.06■□□□□ 0.48
COL4A5P29400 ZNF790-AS1-203ENST00000588906 850 ntTSL 2 BASIC18.06■□□□□ 0.48
COL4A5P29400 AC008687.1-201ENST00000591656 786 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
COL4A5P29400 AC005041.3-201ENST00000606287 649 ntBASIC18.06■□□□□ 0.48
COL4A5P29400 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL4A5P29400 MIR22HG-201ENST00000334146 1383 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
COL4A5P29400 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC18.06■□□□□ 0.48
COL4A5P29400 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
COL4A5P29400 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL4A5P29400 AC010491.1-201ENST00000563101 2797 ntBASIC18.06■□□□□ 0.48
COL4A5P29400 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
COL4A5P29400 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL4A5P29400 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL4A5P29400 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC18.06■□□□□ 0.48
COL4A5P29400 CICP13-201ENST00000422015 2789 ntBASIC18.06■□□□□ 0.48
COL4A5P29400 CRIP3-202ENST00000372569 962 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL4A5P29400 NCR3-202ENST00000376071 541 ntTSL 5 BASIC18.06■□□□□ 0.48
COL4A5P29400 SERF2-209ENST00000409646 559 ntTSL 4 BASIC18.06■□□□□ 0.48
COL4A5P29400 AC079112.1-201ENST00000454972 939 ntBASIC18.06■□□□□ 0.48
COL4A5P29400 AC011462.2-201ENST00000598887 344 ntTSL 5 BASIC18.06■□□□□ 0.48
COL4A5P29400 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL4A5P29400 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC18.05■□□□□ 0.48
COL4A5P29400 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
COL4A5P29400 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC18.05■□□□□ 0.48
COL4A5P29400 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL4A5P29400 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
COL4A5P29400 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL4A5P29400 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC18.05■□□□□ 0.48
COL4A5P29400 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
COL4A5P29400 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL4A5P29400 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL4A5P29400 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
COL4A5P29400 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL4A5P29400 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL4A5P29400 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL4A5P29400 AL024498.2-201ENST00000480294 1589 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
COL4A5P29400 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL4A5P29400 SLC25A19-205ENST00000442286 1496 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
COL4A5P29400 RAN-210ENST00000541630 1475 ntTSL 2 BASIC18.05■□□□□ 0.48
COL4A5P29400 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL4A5P29400 NTF3-202ENST00000423158 1336 ntAPPRIS ALT1 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL4A5P29400 CICP12-201ENST00000455801 843 ntBASIC18.05■□□□□ 0.48
COL4A5P29400 AP000696.1-201ENST00000457669 1133 ntTSL 3 BASIC18.05■□□□□ 0.48
COL4A5P29400 PPFIBP1-204ENST00000535047 875 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
COL4A5P29400 SDHAF2-206ENST00000542074 835 ntTSL 2 BASIC18.05■□□□□ 0.48
COL4A5P29400 AL031713.1-201ENST00000564813 661 ntBASIC18.05■□□□□ 0.48
COL4A5P29400 TMEM220-AS1-207ENST00000584714 541 ntTSL 4 BASIC18.05■□□□□ 0.48
COL4A5P29400 ALKBH2-208ENST00000619381 895 ntTSL 5 BASIC18.05■□□□□ 0.48
COL4A5P29400 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
COL4A5P29400 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL4A5P29400 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
COL4A5P29400 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL4A5P29400 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL4A5P29400 AC079328.2-201ENST00000561241 3354 ntBASIC18.04■□□□□ 0.48
COL4A5P29400 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
COL4A5P29400 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC18.04■□□□□ 0.48
COL4A5P29400 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL4A5P29400 LAIR2-201ENST00000301202 699 ntAPPRIS P4 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL4A5P29400 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL4A5P29400 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
COL4A5P29400 RPL7P35-201ENST00000446943 740 ntBASIC18.04■□□□□ 0.48
COL4A5P29400 AP000358.1-201ENST00000456260 156 ntBASIC18.04■□□□□ 0.48
COL4A5P29400 NCK1-AS1-203ENST00000474250 827 ntTSL 2 BASIC18.04■□□□□ 0.48
COL4A5P29400 MRPL22P1-201ENST00000505398 616 ntBASIC18.04■□□□□ 0.48
COL4A5P29400 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC18.04■□□□□ 0.48
COL4A5P29400 NAT9-220ENST00000582870 896 ntTSL 5 BASIC18.04■□□□□ 0.48
COL4A5P29400 CUTA-215ENST00000611509 1199 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL4A5P29400 AC020763.4-201ENST00000623414 4170 ntBASIC18.04■□□□□ 0.48
COL4A5P29400 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC18.04■□□□□ 0.48
COL4A5P29400 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL4A5P29400 OSER1-201ENST00000255174 1572 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL4A5P29400 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL4A5P29400 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL4A5P29400 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC18.04■□□□□ 0.48
COL4A5P29400 SUPT4H1-201ENST00000225504 1489 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL4A5P29400 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC18.04■□□□□ 0.48
COL4A5P29400 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC18.03■□□□□ 0.48
COL4A5P29400 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL4A5P29400 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
COL4A5P29400 MANEAL-201ENST00000329006 1930 ntTSL 2 BASIC18.03■□□□□ 0.48
COL4A5P29400 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
COL4A5P29400 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL4A5P29400 RPP25L-202ENST00000378959 888 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL4A5P29400 AL583805.1-201ENST00000391389 531 ntBASIC18.03■□□□□ 0.48
COL4A5P29400 HPGD-203ENST00000422112 805 ntTSL 2 BASIC18.03■□□□□ 0.48
COL4A5P29400 LAMA4-208ENST00000431543 1080 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
COL4A5P29400 AC026320.2-201ENST00000434379 478 ntBASIC18.03■□□□□ 0.48
COL4A5P29400 AC004869.1-201ENST00000440935 540 ntTSL 4 BASIC18.03■□□□□ 0.48
COL4A5P29400 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC18.03■□□□□ 0.48
COL4A5P29400 TMEM231-206ENST00000565067 1078 ntTSL 5 BASIC18.03■□□□□ 0.48
COL4A5P29400 AP005901.3-201ENST00000581666 415 ntTSL 3 BASIC18.03■□□□□ 0.48
COL4A5P29400 RPS15-202ENST00000585665 467 ntTSL 3 BASIC18.03■□□□□ 0.48
COL4A5P29400 BCL2L12-204ENST00000594157 620 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
COL4A5P29400 EXOSC5-204ENST00000596905 826 ntTSL 2 BASIC18.03■□□□□ 0.48
COL4A5P29400 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC18.03■□□□□ 0.48
COL4A5P29400 HIST1H4I-201ENST00000615353 1294 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
COL4A5P29400 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
COL4A5P29400 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC18.03■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms