Protein–RNA interactions for Protein: H7C350

CCDC188, Coiled-coil domain-containing protein 188, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC188H7C350 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CCDC188H7C350 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CCDC188H7C350 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CCDC188H7C350 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
CCDC188H7C350 SERP1-201ENST00000239944 3171 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC188H7C350 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC188H7C350 MEOX2-201ENST00000262041 2500 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC188H7C350 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC188H7C350 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC188H7C350 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC16.1■□□□□ 0.17
CCDC188H7C350 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
CCDC188H7C350 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC188H7C350 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC188H7C350 ALDH4A1-206ENST00000538839 2957 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC188H7C350 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC16.1■□□□□ 0.17
CCDC188H7C350 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC188H7C350 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC188H7C350 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC16.1■□□□□ 0.17
CCDC188H7C350 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
CCDC188H7C350 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC188H7C350 TARDBPP1-201ENST00000442013 1203 ntBASIC16.1■□□□□ 0.17
CCDC188H7C350 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC188H7C350 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC16.1■□□□□ 0.17
CCDC188H7C350 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC188H7C350 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC16.1■□□□□ 0.17
CCDC188H7C350 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC16.1■□□□□ 0.17
CCDC188H7C350 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC188H7C350 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC16.1■□□□□ 0.17
CCDC188H7C350 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC188H7C350 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC16.1■□□□□ 0.17
CCDC188H7C350 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC16.1■□□□□ 0.17
CCDC188H7C350 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC188H7C350 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC188H7C350 ARHGEF26-203ENST00000465817 2353 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC188H7C350 AC097359.2-201ENST00000604992 2389 ntBASIC16.1■□□□□ 0.17
CCDC188H7C350 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC188H7C350 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC188H7C350 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC188H7C350 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC16.1■□□□□ 0.17
CCDC188H7C350 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC188H7C350 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC16.1■□□□□ 0.17
CCDC188H7C350 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC16.1■□□□□ 0.17
CCDC188H7C350 UMODL1-AS1-201ENST00000329015 2141 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC188H7C350 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
CCDC188H7C350 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC16.1■□□□□ 0.17
CCDC188H7C350 NKIRAS2-201ENST00000307641 2948 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC188H7C350 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC188H7C350 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
CCDC188H7C350 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
CCDC188H7C350 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC16.1■□□□□ 0.17
CCDC188H7C350 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC188H7C350 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC188H7C350 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC188H7C350 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC16.1■□□□□ 0.17
CCDC188H7C350 OS9-207ENST00000439210 1946 ntTSL 2 BASIC16.09■□□□□ 0.17
CCDC188H7C350 MCRS1-211ENST00000550165 1936 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
CCDC188H7C350 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC16.09■□□□□ 0.17
CCDC188H7C350 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC16.09■□□□□ 0.17
CCDC188H7C350 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CCDC188H7C350 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
CCDC188H7C350 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC16.09■□□□□ 0.17
CCDC188H7C350 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC16.09■□□□□ 0.17
CCDC188H7C350 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
CCDC188H7C350 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC16.09■□□□□ 0.17
CCDC188H7C350 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CCDC188H7C350 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CCDC188H7C350 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
CCDC188H7C350 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
CCDC188H7C350 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CCDC188H7C350 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC16.09■□□□□ 0.17
CCDC188H7C350 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
CCDC188H7C350 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
CCDC188H7C350 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CCDC188H7C350 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CCDC188H7C350 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
CCDC188H7C350 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CCDC188H7C350 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC16.09■□□□□ 0.17
CCDC188H7C350 AL353705.2-201ENST00000428243 662 ntBASIC16.09■□□□□ 0.17
CCDC188H7C350 FAM58CP-201ENST00000435741 640 ntBASIC16.09■□□□□ 0.17
CCDC188H7C350 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC16.09■□□□□ 0.17
CCDC188H7C350 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC16.09■□□□□ 0.17
CCDC188H7C350 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC16.09■□□□□ 0.17
CCDC188H7C350 RPL13AP23-201ENST00000480739 586 ntBASIC16.09■□□□□ 0.17
CCDC188H7C350 KRT8P48-201ENST00000515599 1220 ntBASIC16.09■□□□□ 0.17
CCDC188H7C350 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
CCDC188H7C350 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CCDC188H7C350 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC16.09■□□□□ 0.17
CCDC188H7C350 SF1-209ENST00000433274 2317 ntTSL 2 BASIC16.09■□□□□ 0.17
CCDC188H7C350 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC16.09■□□□□ 0.17
CCDC188H7C350 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
CCDC188H7C350 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC16.09■□□□□ 0.17
CCDC188H7C350 RBPMS-201ENST00000287771 2974 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
CCDC188H7C350 PUS1-202ENST00000376649 4094 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
CCDC188H7C350 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
CCDC188H7C350 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC16.09■□□□□ 0.17
CCDC188H7C350 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC16.09■□□□□ 0.17
CCDC188H7C350 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC16.09■□□□□ 0.17
CCDC188H7C350 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CCDC188H7C350 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC16.09■□□□□ 0.17
CCDC188H7C350 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC16.09■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 79.7 ms