Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC15.25■□□□□ 0.03
TMX2-CTNND1H3BSU7 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
TMX2-CTNND1H3BSU7 ACTG1P3-201ENST00000431775 1114 ntBASIC15.25■□□□□ 0.03
TMX2-CTNND1H3BSU7 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC15.25■□□□□ 0.03
TMX2-CTNND1H3BSU7 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC15.25■□□□□ 0.03
TMX2-CTNND1H3BSU7 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TMX2-CTNND1H3BSU7 GALT-202ENST00000450095 1280 ntTSL 2 BASIC15.25■□□□□ 0.03
TMX2-CTNND1H3BSU7 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC15.25■□□□□ 0.03
TMX2-CTNND1H3BSU7 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
TMX2-CTNND1H3BSU7 AC092658.1-201ENST00000505836 891 ntBASIC15.25■□□□□ 0.03
TMX2-CTNND1H3BSU7 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC15.25■□□□□ 0.03
TMX2-CTNND1H3BSU7 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC15.25■□□□□ 0.03
TMX2-CTNND1H3BSU7 AL022328.1-201ENST00000610050 478 ntBASIC15.25■□□□□ 0.03
TMX2-CTNND1H3BSU7 CU634019.7-201ENST00000624153 1185 ntBASIC15.25■□□□□ 0.03
TMX2-CTNND1H3BSU7 FP236241.2-201ENST00000624906 1185 ntBASIC15.25■□□□□ 0.03
TMX2-CTNND1H3BSU7 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
TMX2-CTNND1H3BSU7 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC15.25■□□□□ 0.03
TMX2-CTNND1H3BSU7 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
TMX2-CTNND1H3BSU7 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
TMX2-CTNND1H3BSU7 CNPY1-203ENST00000636372 2259 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
TMX2-CTNND1H3BSU7 PTPRA-201ENST00000216877 3725 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TMX2-CTNND1H3BSU7 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TMX2-CTNND1H3BSU7 AC005840.4-201ENST00000541242 2494 ntBASIC15.25■□□□□ 0.03
TMX2-CTNND1H3BSU7 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
TMX2-CTNND1H3BSU7 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC15.25■□□□□ 0.03
TMX2-CTNND1H3BSU7 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
TMX2-CTNND1H3BSU7 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
TMX2-CTNND1H3BSU7 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
TMX2-CTNND1H3BSU7 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC15.25■□□□□ 0.03
TMX2-CTNND1H3BSU7 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
TMX2-CTNND1H3BSU7 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TMX2-CTNND1H3BSU7 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC15.25■□□□□ 0.03
TMX2-CTNND1H3BSU7 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
TMX2-CTNND1H3BSU7 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TMX2-CTNND1H3BSU7 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
TMX2-CTNND1H3BSU7 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
TMX2-CTNND1H3BSU7 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC15.24■□□□□ 0.03
TMX2-CTNND1H3BSU7 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
TMX2-CTNND1H3BSU7 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
TMX2-CTNND1H3BSU7 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC15.24■□□□□ 0.03
TMX2-CTNND1H3BSU7 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
TMX2-CTNND1H3BSU7 SERP1-201ENST00000239944 3171 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
TMX2-CTNND1H3BSU7 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC15.24■□□□□ 0.03
TMX2-CTNND1H3BSU7 KIAA1683-209ENST00000612316 2684 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
TMX2-CTNND1H3BSU7 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
TMX2-CTNND1H3BSU7 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
TMX2-CTNND1H3BSU7 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC15.24■□□□□ 0.03
TMX2-CTNND1H3BSU7 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
TMX2-CTNND1H3BSU7 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC15.24■□□□□ 0.03
TMX2-CTNND1H3BSU7 AL592424.1-201ENST00000563624 1536 ntBASIC15.24■□□□□ 0.03
TMX2-CTNND1H3BSU7 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
TMX2-CTNND1H3BSU7 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
TMX2-CTNND1H3BSU7 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC15.24■□□□□ 0.03
TMX2-CTNND1H3BSU7 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
TMX2-CTNND1H3BSU7 ACIN1-203ENST00000357481 2563 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
TMX2-CTNND1H3BSU7 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
TMX2-CTNND1H3BSU7 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
TMX2-CTNND1H3BSU7 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
TMX2-CTNND1H3BSU7 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
TMX2-CTNND1H3BSU7 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
TMX2-CTNND1H3BSU7 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC15.24■□□□□ 0.03
TMX2-CTNND1H3BSU7 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
TMX2-CTNND1H3BSU7 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
TMX2-CTNND1H3BSU7 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC15.24■□□□□ 0.03
TMX2-CTNND1H3BSU7 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC15.24■□□□□ 0.03
TMX2-CTNND1H3BSU7 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC15.24■□□□□ 0.03
TMX2-CTNND1H3BSU7 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC15.24■□□□□ 0.03
TMX2-CTNND1H3BSU7 SLC25A47P1-201ENST00000531577 414 ntBASIC15.24■□□□□ 0.03
TMX2-CTNND1H3BSU7 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC15.24■□□□□ 0.03
TMX2-CTNND1H3BSU7 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC15.24■□□□□ 0.03
TMX2-CTNND1H3BSU7 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC15.24■□□□□ 0.03
TMX2-CTNND1H3BSU7 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC15.24■□□□□ 0.03
TMX2-CTNND1H3BSU7 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
TMX2-CTNND1H3BSU7 MIR6775-201ENST00000617557 69 ntBASIC15.24■□□□□ 0.03
TMX2-CTNND1H3BSU7 ABBA01031660.1-201ENST00000635219 756 ntBASIC15.24■□□□□ 0.03
TMX2-CTNND1H3BSU7 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
TMX2-CTNND1H3BSU7 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC15.24■□□□□ 0.03
TMX2-CTNND1H3BSU7 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
TMX2-CTNND1H3BSU7 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
TMX2-CTNND1H3BSU7 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
TMX2-CTNND1H3BSU7 EPHX2-207ENST00000521400 3140 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
TMX2-CTNND1H3BSU7 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
TMX2-CTNND1H3BSU7 AC004706.4-201ENST00000634965 3537 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
TMX2-CTNND1H3BSU7 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC15.24■□□□□ 0.03
TMX2-CTNND1H3BSU7 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC15.24■□□□□ 0.03
TMX2-CTNND1H3BSU7 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC15.24■□□□□ 0.03
TMX2-CTNND1H3BSU7 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TMX2-CTNND1H3BSU7 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC15.23■□□□□ 0.03
TMX2-CTNND1H3BSU7 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
TMX2-CTNND1H3BSU7 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TMX2-CTNND1H3BSU7 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC15.23■□□□□ 0.03
TMX2-CTNND1H3BSU7 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TMX2-CTNND1H3BSU7 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
TMX2-CTNND1H3BSU7 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TMX2-CTNND1H3BSU7 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TMX2-CTNND1H3BSU7 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
TMX2-CTNND1H3BSU7 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC15.23■□□□□ 0.03
TMX2-CTNND1H3BSU7 PPP1R26P4-201ENST00000619065 3527 ntBASIC15.23■□□□□ 0.03
TMX2-CTNND1H3BSU7 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
TMX2-CTNND1H3BSU7 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 47.3 ms