Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC12.57□□□□□ -0.4
FOXA2Q9Y261 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
FOXA2Q9Y261 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC12.57□□□□□ -0.4
FOXA2Q9Y261 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC12.57□□□□□ -0.4
FOXA2Q9Y261 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC12.57□□□□□ -0.4
FOXA2Q9Y261 AC093512.1-201ENST00000617969 520 ntBASIC12.57□□□□□ -0.4
FOXA2Q9Y261 SPDYE12P-201ENST00000618416 771 ntBASIC12.57□□□□□ -0.4
FOXA2Q9Y261 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC12.57□□□□□ -0.4
FOXA2Q9Y261 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
FOXA2Q9Y261 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
FOXA2Q9Y261 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
FOXA2Q9Y261 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC12.57□□□□□ -0.4
FOXA2Q9Y261 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
FOXA2Q9Y261 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
FOXA2Q9Y261 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
FOXA2Q9Y261 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC12.57□□□□□ -0.4
FOXA2Q9Y261 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC12.57□□□□□ -0.4
FOXA2Q9Y261 IMPDH1P4-201ENST00000445028 1534 ntBASIC12.57□□□□□ -0.4
FOXA2Q9Y261 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
FOXA2Q9Y261 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC12.57□□□□□ -0.4
FOXA2Q9Y261 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
FOXA2Q9Y261 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
FOXA2Q9Y261 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
FOXA2Q9Y261 KRT8P12-202ENST00000472924 1397 ntBASIC12.56□□□□□ -0.4
FOXA2Q9Y261 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
FOXA2Q9Y261 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC12.56□□□□□ -0.4
FOXA2Q9Y261 AC084364.1-201ENST00000551967 1556 ntBASIC12.56□□□□□ -0.4
FOXA2Q9Y261 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
FOXA2Q9Y261 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
FOXA2Q9Y261 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC12.56□□□□□ -0.4
FOXA2Q9Y261 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
FOXA2Q9Y261 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
FOXA2Q9Y261 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
FOXA2Q9Y261 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC12.56□□□□□ -0.4
FOXA2Q9Y261 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC12.56□□□□□ -0.4
FOXA2Q9Y261 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC12.56□□□□□ -0.4
FOXA2Q9Y261 ABCC10-201ENST00000244533 5088 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
FOXA2Q9Y261 TRAPPC8-201ENST00000283351 6226 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
FOXA2Q9Y261 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
FOXA2Q9Y261 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC12.56□□□□□ -0.4
FOXA2Q9Y261 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC12.56□□□□□ -0.4
FOXA2Q9Y261 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC12.56□□□□□ -0.4
FOXA2Q9Y261 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
FOXA2Q9Y261 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
FOXA2Q9Y261 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC12.56□□□□□ -0.4
FOXA2Q9Y261 TREML5P-201ENST00000421694 576 ntBASIC12.56□□□□□ -0.4
FOXA2Q9Y261 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC12.56□□□□□ -0.4
FOXA2Q9Y261 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC12.56□□□□□ -0.4
FOXA2Q9Y261 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC12.56□□□□□ -0.4
FOXA2Q9Y261 AC027369.6-201ENST00000525520 931 ntBASIC12.56□□□□□ -0.4
FOXA2Q9Y261 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC12.56□□□□□ -0.4
FOXA2Q9Y261 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC12.56□□□□□ -0.4
FOXA2Q9Y261 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
FOXA2Q9Y261 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC12.56□□□□□ -0.4
FOXA2Q9Y261 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC12.56□□□□□ -0.4
FOXA2Q9Y261 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
FOXA2Q9Y261 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
FOXA2Q9Y261 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC12.56□□□□□ -0.4
FOXA2Q9Y261 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC12.56□□□□□ -0.4
FOXA2Q9Y261 GSN-203ENST00000373808 2664 ntTSL 2 BASIC12.56□□□□□ -0.4
FOXA2Q9Y261 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
FOXA2Q9Y261 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC12.56□□□□□ -0.4
FOXA2Q9Y261 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
FOXA2Q9Y261 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC12.56□□□□□ -0.4
FOXA2Q9Y261 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC12.56□□□□□ -0.4
FOXA2Q9Y261 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
FOXA2Q9Y261 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC12.56□□□□□ -0.4
FOXA2Q9Y261 OR2I1P-209ENST00000641730 5365 ntBASIC12.56□□□□□ -0.4
FOXA2Q9Y261 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
FOXA2Q9Y261 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC12.55□□□□□ -0.4
FOXA2Q9Y261 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC12.55□□□□□ -0.4
FOXA2Q9Y261 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
FOXA2Q9Y261 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
FOXA2Q9Y261 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
FOXA2Q9Y261 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC12.55□□□□□ -0.4
FOXA2Q9Y261 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
FOXA2Q9Y261 AL009178.2-201ENST00000597278 2719 ntBASIC12.55□□□□□ -0.4
FOXA2Q9Y261 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
FOXA2Q9Y261 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC12.55□□□□□ -0.4
FOXA2Q9Y261 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
FOXA2Q9Y261 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
FOXA2Q9Y261 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
FOXA2Q9Y261 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
FOXA2Q9Y261 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
FOXA2Q9Y261 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
FOXA2Q9Y261 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
FOXA2Q9Y261 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC12.55□□□□□ -0.4
FOXA2Q9Y261 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC12.55□□□□□ -0.4
FOXA2Q9Y261 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC12.55□□□□□ -0.4
FOXA2Q9Y261 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
FOXA2Q9Y261 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
FOXA2Q9Y261 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
FOXA2Q9Y261 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC12.55□□□□□ -0.4
FOXA2Q9Y261 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
FOXA2Q9Y261 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
FOXA2Q9Y261 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
FOXA2Q9Y261 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
FOXA2Q9Y261 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
FOXA2Q9Y261 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
FOXA2Q9Y261 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC12.55□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 62.9 ms