Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 PNKD-204ENST00000436005 978 ntTSL 5 BASIC15.39■□□□□ 0.05
TRIM39Q9HCM9 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC15.39■□□□□ 0.05
TRIM39Q9HCM9 GALT-202ENST00000450095 1280 ntTSL 2 BASIC15.39■□□□□ 0.05
TRIM39Q9HCM9 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
TRIM39Q9HCM9 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC15.39■□□□□ 0.05
TRIM39Q9HCM9 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC15.39■□□□□ 0.05
TRIM39Q9HCM9 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC15.39■□□□□ 0.05
TRIM39Q9HCM9 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC15.39■□□□□ 0.05
TRIM39Q9HCM9 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC15.39■□□□□ 0.05
TRIM39Q9HCM9 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRIM39Q9HCM9 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC15.39■□□□□ 0.05
TRIM39Q9HCM9 AL049840.4-201ENST00000602422 811 ntBASIC15.39■□□□□ 0.05
TRIM39Q9HCM9 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
TRIM39Q9HCM9 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
TRIM39Q9HCM9 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRIM39Q9HCM9 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC15.39■□□□□ 0.05
TRIM39Q9HCM9 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
TRIM39Q9HCM9 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
TRIM39Q9HCM9 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
TRIM39Q9HCM9 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRIM39Q9HCM9 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRIM39Q9HCM9 HLA-DQB2-231ENST00000435145 2026 ntBASIC15.39■□□□□ 0.05
TRIM39Q9HCM9 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
TRIM39Q9HCM9 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRIM39Q9HCM9 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRIM39Q9HCM9 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRIM39Q9HCM9 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRIM39Q9HCM9 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
TRIM39Q9HCM9 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
TRIM39Q9HCM9 THSD4-202ENST00000355327 9200 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
TRIM39Q9HCM9 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC15.38■□□□□ 0.05
TRIM39Q9HCM9 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
TRIM39Q9HCM9 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
TRIM39Q9HCM9 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
TRIM39Q9HCM9 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
TRIM39Q9HCM9 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
TRIM39Q9HCM9 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
TRIM39Q9HCM9 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
TRIM39Q9HCM9 WARS-232ENST00000556645 2508 ntTSL 5 BASIC15.38■□□□□ 0.05
TRIM39Q9HCM9 ELFN2-207ENST00000613079 8360 ntAPPRIS P1 TSL 4 BASIC15.38■□□□□ 0.05
TRIM39Q9HCM9 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
TRIM39Q9HCM9 CU639417.3-201ENST00000624240 1404 ntBASIC15.38■□□□□ 0.05
TRIM39Q9HCM9 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC15.38■□□□□ 0.05
TRIM39Q9HCM9 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
TRIM39Q9HCM9 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
TRIM39Q9HCM9 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
TRIM39Q9HCM9 GRAP-202ENST00000395635 834 ntTSL 2 BASIC15.38■□□□□ 0.05
TRIM39Q9HCM9 SUN1-204ENST00000403868 978 ntTSL 2 BASIC15.38■□□□□ 0.05
TRIM39Q9HCM9 NME2P1-201ENST00000426182 414 ntBASIC15.38■□□□□ 0.05
TRIM39Q9HCM9 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC15.38■□□□□ 0.05
TRIM39Q9HCM9 PTPA-220ENST00000436883 532 ntTSL 4 BASIC15.38■□□□□ 0.05
TRIM39Q9HCM9 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC15.38■□□□□ 0.05
TRIM39Q9HCM9 AC011495.1-201ENST00000498085 584 ntBASIC15.38■□□□□ 0.05
TRIM39Q9HCM9 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
TRIM39Q9HCM9 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC15.38■□□□□ 0.05
TRIM39Q9HCM9 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC15.38■□□□□ 0.05
TRIM39Q9HCM9 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC15.38■□□□□ 0.05
TRIM39Q9HCM9 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC15.38■□□□□ 0.05
TRIM39Q9HCM9 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC15.38■□□□□ 0.05
TRIM39Q9HCM9 AC133539.2-201ENST00000604757 467 ntBASIC15.38■□□□□ 0.05
TRIM39Q9HCM9 WFDC1-204ENST00000613603 549 ntBASIC15.38■□□□□ 0.05
TRIM39Q9HCM9 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC15.38■□□□□ 0.05
TRIM39Q9HCM9 SRP9-204ENST00000619790 377 ntTSL 2 BASIC15.38■□□□□ 0.05
TRIM39Q9HCM9 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
TRIM39Q9HCM9 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC15.38■□□□□ 0.05
TRIM39Q9HCM9 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC15.38■□□□□ 0.05
TRIM39Q9HCM9 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
TRIM39Q9HCM9 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
TRIM39Q9HCM9 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
TRIM39Q9HCM9 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
TRIM39Q9HCM9 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC15.38■□□□□ 0.05
TRIM39Q9HCM9 DNM1P51-202ENST00000558801 8752 ntTSL 5 BASIC15.38■□□□□ 0.05
TRIM39Q9HCM9 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC15.38■□□□□ 0.05
TRIM39Q9HCM9 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC15.38■□□□□ 0.05
TRIM39Q9HCM9 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC15.38■□□□□ 0.05
TRIM39Q9HCM9 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
TRIM39Q9HCM9 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC15.38■□□□□ 0.05
TRIM39Q9HCM9 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC15.38■□□□□ 0.05
TRIM39Q9HCM9 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC15.38■□□□□ 0.05
TRIM39Q9HCM9 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC15.38■□□□□ 0.05
TRIM39Q9HCM9 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
TRIM39Q9HCM9 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
TRIM39Q9HCM9 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
TRIM39Q9HCM9 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC15.37■□□□□ 0.05
TRIM39Q9HCM9 AC084364.1-201ENST00000551967 1556 ntBASIC15.37■□□□□ 0.05
TRIM39Q9HCM9 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
TRIM39Q9HCM9 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC15.37■□□□□ 0.05
TRIM39Q9HCM9 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
TRIM39Q9HCM9 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC15.37■□□□□ 0.05
TRIM39Q9HCM9 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
TRIM39Q9HCM9 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC15.37■□□□□ 0.05
TRIM39Q9HCM9 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
TRIM39Q9HCM9 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
TRIM39Q9HCM9 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC15.37■□□□□ 0.05
TRIM39Q9HCM9 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC15.37■□□□□ 0.05
TRIM39Q9HCM9 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
TRIM39Q9HCM9 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
TRIM39Q9HCM9 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC15.37■□□□□ 0.05
TRIM39Q9HCM9 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC15.37■□□□□ 0.05
TRIM39Q9HCM9 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms