Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 NMU-202ENST00000505262 693 ntTSL 3 BASIC16.76■□□□□ 0.27
CCDC42Q96M95 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC16.76■□□□□ 0.27
CCDC42Q96M95 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC16.76■□□□□ 0.27
CCDC42Q96M95 CMC2-214ENST00000565925 640 ntTSL 5 BASIC16.76■□□□□ 0.27
CCDC42Q96M95 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC16.76■□□□□ 0.27
CCDC42Q96M95 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC42Q96M95 GRN-214ENST00000589265 1632 ntTSL 5 BASIC16.76■□□□□ 0.27
CCDC42Q96M95 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC16.76■□□□□ 0.27
CCDC42Q96M95 C1R-202ENST00000536053 2347 ntTSL 2 BASIC16.76■□□□□ 0.27
CCDC42Q96M95 PXDNL-201ENST00000356297 4805 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC42Q96M95 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC42Q96M95 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC16.76■□□□□ 0.27
CCDC42Q96M95 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC42Q96M95 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC16.76■□□□□ 0.27
CCDC42Q96M95 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC42Q96M95 PDPK1-201ENST00000268673 4728 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC42Q96M95 AC139749.1-202ENST00000617529 3139 ntBASIC16.76■□□□□ 0.27
CCDC42Q96M95 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC16.76■□□□□ 0.27
CCDC42Q96M95 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC42Q96M95 REXO1L2P-201ENST00000425429 2069 ntBASIC16.76■□□□□ 0.27
CCDC42Q96M95 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
CCDC42Q96M95 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC42Q96M95 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC42Q96M95 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC42Q96M95 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC42Q96M95 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC42Q96M95 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC42Q96M95 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC42Q96M95 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC16.75■□□□□ 0.27
CCDC42Q96M95 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
CCDC42Q96M95 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC42Q96M95 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC42Q96M95 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC16.75■□□□□ 0.27
CCDC42Q96M95 ZNF607-201ENST00000355202 4364 ntAPPRIS P3 TSL 2 BASIC16.75■□□□□ 0.27
CCDC42Q96M95 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC42Q96M95 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC42Q96M95 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
CCDC42Q96M95 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC42Q96M95 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC42Q96M95 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
CCDC42Q96M95 TEX30-205ENST00000376029 959 ntTSL 2 BASIC16.75■□□□□ 0.27
CCDC42Q96M95 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC16.75■□□□□ 0.27
CCDC42Q96M95 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
CCDC42Q96M95 HIST3H2BA-201ENST00000436555 524 ntBASIC16.75■□□□□ 0.27
CCDC42Q96M95 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC16.75■□□□□ 0.27
CCDC42Q96M95 NME4-212ENST00000621774 904 ntTSL 3 BASIC16.75■□□□□ 0.27
CCDC42Q96M95 ATP11B-201ENST00000323116 7325 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
CCDC42Q96M95 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC42Q96M95 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC16.75■□□□□ 0.27
CCDC42Q96M95 PALD1-201ENST00000263563 4555 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC42Q96M95 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC42Q96M95 PEX26-205ENST00000610387 3924 ntTSL 5 BASIC16.75■□□□□ 0.27
CCDC42Q96M95 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC42Q96M95 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC42Q96M95 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC42Q96M95 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC42Q96M95 MYH11-201ENST00000300036 6029 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC42Q96M95 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC16.75■□□□□ 0.27
CCDC42Q96M95 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC42Q96M95 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
CCDC42Q96M95 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC42Q96M95 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC42Q96M95 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC16.74■□□□□ 0.27
CCDC42Q96M95 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
CCDC42Q96M95 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC42Q96M95 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC42Q96M95 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC42Q96M95 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC42Q96M95 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC16.74■□□□□ 0.27
CCDC42Q96M95 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
CCDC42Q96M95 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC16.74■□□□□ 0.27
CCDC42Q96M95 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC42Q96M95 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC16.74■□□□□ 0.27
CCDC42Q96M95 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC16.74■□□□□ 0.27
CCDC42Q96M95 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC42Q96M95 KLHL33-203ENST00000637228 5404 ntTSL 5 BASIC16.74■□□□□ 0.27
CCDC42Q96M95 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC16.74■□□□□ 0.27
CCDC42Q96M95 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC42Q96M95 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC42Q96M95 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC42Q96M95 SPDYE17-201ENST00000412399 783 ntBASIC16.74■□□□□ 0.27
CCDC42Q96M95 MKNK2P1-201ENST00000437526 628 ntBASIC16.74■□□□□ 0.27
CCDC42Q96M95 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC16.74■□□□□ 0.27
CCDC42Q96M95 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC16.74■□□□□ 0.27
CCDC42Q96M95 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC16.74■□□□□ 0.27
CCDC42Q96M95 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC16.74■□□□□ 0.27
CCDC42Q96M95 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC16.74■□□□□ 0.27
CCDC42Q96M95 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC16.74■□□□□ 0.27
CCDC42Q96M95 AC018529.1-201ENST00000613063 361 ntBASIC16.74■□□□□ 0.27
CCDC42Q96M95 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC16.74■□□□□ 0.27
CCDC42Q96M95 CAMSAP1-203ENST00000409386 5730 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
CCDC42Q96M95 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC16.74■□□□□ 0.27
CCDC42Q96M95 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC42Q96M95 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC16.74■□□□□ 0.27
CCDC42Q96M95 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC42Q96M95 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC42Q96M95 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC16.74■□□□□ 0.27
CCDC42Q96M95 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC42Q96M95 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC42Q96M95 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 80.5 ms