Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 FABP5-202ENST00000396359 986 ntTSL 5 BASIC15.26■□□□□ 0.03
PKNOX1P55347 DNAJB3-201ENST00000446806 729 ntBASIC15.26■□□□□ 0.03
PKNOX1P55347 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
PKNOX1P55347 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
PKNOX1P55347 GATD1-206ENST00000526325 756 ntTSL 5 BASIC15.26■□□□□ 0.03
PKNOX1P55347 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC15.26■□□□□ 0.03
PKNOX1P55347 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PKNOX1P55347 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC15.26■□□□□ 0.03
PKNOX1P55347 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
PKNOX1P55347 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
PKNOX1P55347 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC15.26■□□□□ 0.03
PKNOX1P55347 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
PKNOX1P55347 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PKNOX1P55347 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
PKNOX1P55347 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
PKNOX1P55347 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC15.26■□□□□ 0.03
PKNOX1P55347 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC15.26■□□□□ 0.03
PKNOX1P55347 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
PKNOX1P55347 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC15.25■□□□□ 0.03
PKNOX1P55347 TK2-221ENST00000620035 5060 ntTSL 2 BASIC15.25■□□□□ 0.03
PKNOX1P55347 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC15.25■□□□□ 0.03
PKNOX1P55347 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
PKNOX1P55347 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PKNOX1P55347 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC15.25■□□□□ 0.03
PKNOX1P55347 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
PKNOX1P55347 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC15.25■□□□□ 0.03
PKNOX1P55347 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PKNOX1P55347 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC15.25■□□□□ 0.03
PKNOX1P55347 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PKNOX1P55347 C17orf107-201ENST00000381365 3199 ntAPPRIS P2 TSL 2 BASIC15.25■□□□□ 0.03
PKNOX1P55347 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
PKNOX1P55347 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC15.25■□□□□ 0.03
PKNOX1P55347 FOXL1-201ENST00000320241 3655 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
PKNOX1P55347 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
PKNOX1P55347 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC15.25■□□□□ 0.03
PKNOX1P55347 RPS19-201ENST00000221975 500 ntTSL 3 BASIC15.25■□□□□ 0.03
PKNOX1P55347 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PKNOX1P55347 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
PKNOX1P55347 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC15.25■□□□□ 0.03
PKNOX1P55347 STOM-202ENST00000347359 870 ntTSL 2 BASIC15.25■□□□□ 0.03
PKNOX1P55347 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
PKNOX1P55347 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
PKNOX1P55347 CD81-202ENST00000381036 880 ntTSL 3 BASIC15.25■□□□□ 0.03
PKNOX1P55347 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
PKNOX1P55347 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC15.25■□□□□ 0.03
PKNOX1P55347 AL627223.1-201ENST00000416693 442 ntBASIC15.25■□□□□ 0.03
PKNOX1P55347 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC15.25■□□□□ 0.03
PKNOX1P55347 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC15.25■□□□□ 0.03
PKNOX1P55347 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC15.25■□□□□ 0.03
PKNOX1P55347 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
PKNOX1P55347 NME4-207ENST00000450036 985 ntTSL 3 BASIC15.25■□□□□ 0.03
PKNOX1P55347 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC15.25■□□□□ 0.03
PKNOX1P55347 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC15.25■□□□□ 0.03
PKNOX1P55347 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC15.25■□□□□ 0.03
PKNOX1P55347 CCND1-203ENST00000536559 553 ntTSL 3 BASIC15.25■□□□□ 0.03
PKNOX1P55347 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC15.25■□□□□ 0.03
PKNOX1P55347 LITAF-210ENST00000571976 548 ntTSL 2 BASIC15.25■□□□□ 0.03
PKNOX1P55347 LITAF-214ENST00000574703 486 ntTSL 2 BASIC15.25■□□□□ 0.03
PKNOX1P55347 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC15.25■□□□□ 0.03
PKNOX1P55347 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC15.25■□□□□ 0.03
PKNOX1P55347 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
PKNOX1P55347 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC15.25■□□□□ 0.03
PKNOX1P55347 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
PKNOX1P55347 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
PKNOX1P55347 ST20-AS1-201ENST00000560255 4223 ntBASIC15.25■□□□□ 0.03
PKNOX1P55347 PPP1R12A-AS1-201ENST00000552885 3234 ntTSL 3 BASIC15.25■□□□□ 0.03
PKNOX1P55347 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PKNOX1P55347 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PKNOX1P55347 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PKNOX1P55347 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC15.25■□□□□ 0.03
PKNOX1P55347 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
PKNOX1P55347 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC15.25■□□□□ 0.03
PKNOX1P55347 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC15.25■□□□□ 0.03
PKNOX1P55347 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PKNOX1P55347 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
PKNOX1P55347 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
PKNOX1P55347 HOXC11-202ENST00000546378 3261 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PKNOX1P55347 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PKNOX1P55347 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PKNOX1P55347 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC15.24■□□□□ 0.03
PKNOX1P55347 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
PKNOX1P55347 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PKNOX1P55347 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PKNOX1P55347 SYT9-201ENST00000318881 3955 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PKNOX1P55347 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PKNOX1P55347 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
PKNOX1P55347 ADAMTS14-202ENST00000373208 5269 ntAPPRIS P4 TSL 2 BASIC15.24■□□□□ 0.03
PKNOX1P55347 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PKNOX1P55347 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
PKNOX1P55347 NTNG1-208ENST00000370074 3048 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
PKNOX1P55347 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
PKNOX1P55347 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
PKNOX1P55347 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
PKNOX1P55347 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC15.24■□□□□ 0.03
PKNOX1P55347 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC15.24■□□□□ 0.03
PKNOX1P55347 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PKNOX1P55347 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
PKNOX1P55347 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PKNOX1P55347 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PKNOX1P55347 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC15.24■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 53.4 ms