Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC14.21□□□□□ -0.13
MSX1P28360 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC14.21□□□□□ -0.13
MSX1P28360 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC14.21□□□□□ -0.13
MSX1P28360 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC14.21□□□□□ -0.13
MSX1P28360 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
MSX1P28360 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
MSX1P28360 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC14.21□□□□□ -0.13
MSX1P28360 AC104596.2-201ENST00000512793 793 ntBASIC14.21□□□□□ -0.13
MSX1P28360 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC14.21□□□□□ -0.13
MSX1P28360 AC073575.1-201ENST00000551125 596 ntTSL 3 BASIC14.21□□□□□ -0.13
MSX1P28360 AC023310.3-201ENST00000557027 670 ntBASIC14.21□□□□□ -0.13
MSX1P28360 AC100756.1-201ENST00000562736 682 ntBASIC14.21□□□□□ -0.13
MSX1P28360 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
MSX1P28360 AC138749.3-201ENST00000567691 622 ntBASIC14.21□□□□□ -0.13
MSX1P28360 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
MSX1P28360 NAA38-206ENST00000576384 424 ntTSL 2 BASIC14.21□□□□□ -0.13
MSX1P28360 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC14.21□□□□□ -0.13
MSX1P28360 UBL5-208ENST00000593087 320 ntTSL 3 BASIC14.21□□□□□ -0.13
MSX1P28360 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
MSX1P28360 AC116165.1-201ENST00000611806 668 ntBASIC14.21□□□□□ -0.13
MSX1P28360 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC14.21□□□□□ -0.13
MSX1P28360 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC14.21□□□□□ -0.13
MSX1P28360 AL645728.2-202ENST00000641679 227 ntBASIC14.21□□□□□ -0.13
MSX1P28360 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
MSX1P28360 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC14.21□□□□□ -0.13
MSX1P28360 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC14.21□□□□□ -0.13
MSX1P28360 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
MSX1P28360 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
MSX1P28360 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
MSX1P28360 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
MSX1P28360 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
MSX1P28360 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC14.21□□□□□ -0.14
MSX1P28360 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
MSX1P28360 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
MSX1P28360 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC14.21□□□□□ -0.14
MSX1P28360 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
MSX1P28360 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.14
MSX1P28360 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.14
MSX1P28360 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
MSX1P28360 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC14.21□□□□□ -0.14
MSX1P28360 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
MSX1P28360 UNC13A-202ENST00000519716 9838 ntAPPRIS P2 TSL 5 BASIC14.2□□□□□ -0.14
MSX1P28360 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
MSX1P28360 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
MSX1P28360 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
MSX1P28360 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
MSX1P28360 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
MSX1P28360 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
MSX1P28360 AL669831.1-201ENST00000506640 6432 ntTSL 5 BASIC14.2□□□□□ -0.14
MSX1P28360 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
MSX1P28360 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
MSX1P28360 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
MSX1P28360 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
MSX1P28360 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
MSX1P28360 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
MSX1P28360 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
MSX1P28360 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC14.2□□□□□ -0.14
MSX1P28360 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
MSX1P28360 SUN1-204ENST00000403868 978 ntTSL 2 BASIC14.2□□□□□ -0.14
MSX1P28360 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC14.2□□□□□ -0.14
MSX1P28360 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC14.2□□□□□ -0.14
MSX1P28360 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC14.2□□□□□ -0.14
MSX1P28360 AC022210.1-201ENST00000449856 793 ntBASIC14.2□□□□□ -0.14
MSX1P28360 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
MSX1P28360 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC14.2□□□□□ -0.14
MSX1P28360 RN7SL399P-201ENST00000471648 279 ntBASIC14.2□□□□□ -0.14
MSX1P28360 RPL13AP25-201ENST00000484130 612 ntBASIC14.2□□□□□ -0.14
MSX1P28360 AC123567.1-201ENST00000548294 1261 ntBASIC14.2□□□□□ -0.14
MSX1P28360 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC14.2□□□□□ -0.14
MSX1P28360 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC14.2□□□□□ -0.14
MSX1P28360 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC14.2□□□□□ -0.14
MSX1P28360 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC14.2□□□□□ -0.14
MSX1P28360 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
MSX1P28360 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC14.2□□□□□ -0.14
MSX1P28360 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
MSX1P28360 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
MSX1P28360 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
MSX1P28360 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
MSX1P28360 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
MSX1P28360 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
MSX1P28360 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC14.2□□□□□ -0.14
MSX1P28360 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC14.2□□□□□ -0.14
MSX1P28360 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
MSX1P28360 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
MSX1P28360 TCHH-201ENST00000368804 6900 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
MSX1P28360 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
MSX1P28360 ZFHX2-205ENST00000615307 1972 ntTSL 2 BASIC14.2□□□□□ -0.14
MSX1P28360 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
MSX1P28360 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
MSX1P28360 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC14.19□□□□□ -0.14
MSX1P28360 AC008741.2-201ENST00000612792 3115 ntBASIC14.19□□□□□ -0.14
MSX1P28360 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC14.19□□□□□ -0.14
MSX1P28360 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC14.19□□□□□ -0.14
MSX1P28360 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC14.19□□□□□ -0.14
MSX1P28360 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
MSX1P28360 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
MSX1P28360 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC14.19□□□□□ -0.14
MSX1P28360 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC14.19□□□□□ -0.14
MSX1P28360 MFF-204ENST00000353339 2186 ntTSL 5 BASIC14.19□□□□□ -0.14
MSX1P28360 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 42.9 ms