Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 PDCD6-213ENST00000618970 931 ntTSL 3 BASIC15.62■□□□□ 0.09
COL6A3P12111 AC006207.1-201ENST00000637958 562 ntTSL 5 BASIC15.62■□□□□ 0.09
COL6A3P12111 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
COL6A3P12111 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
COL6A3P12111 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
COL6A3P12111 SVOPL-201ENST00000288513 1413 ntTSL 2 BASIC15.62■□□□□ 0.09
COL6A3P12111 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
COL6A3P12111 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
COL6A3P12111 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC15.62■□□□□ 0.09
COL6A3P12111 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
COL6A3P12111 GSTT2B-202ENST00000404172 819 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
COL6A3P12111 DCAF7-201ENST00000415273 1220 ntTSL 2 BASIC15.62■□□□□ 0.09
COL6A3P12111 CSNK1G2P1-201ENST00000442675 955 ntBASIC15.62■□□□□ 0.09
COL6A3P12111 AC084030.1-201ENST00000455068 561 ntTSL 4 BASIC15.62■□□□□ 0.09
COL6A3P12111 RPS6KA2-AS1-201ENST00000455390 627 ntTSL 5 BASIC15.62■□□□□ 0.09
COL6A3P12111 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
COL6A3P12111 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC15.62■□□□□ 0.09
COL6A3P12111 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
COL6A3P12111 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC15.62■□□□□ 0.09
COL6A3P12111 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC15.62■□□□□ 0.09
COL6A3P12111 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC15.61■□□□□ 0.09
COL6A3P12111 AL133373.2-201ENST00000623187 2828 ntBASIC15.61■□□□□ 0.09
COL6A3P12111 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC15.61■□□□□ 0.09
COL6A3P12111 FAM92A-202ENST00000423990 914 ntTSL 5 BASIC15.61■□□□□ 0.09
COL6A3P12111 MESTP3-201ENST00000503460 968 ntBASIC15.61■□□□□ 0.09
COL6A3P12111 AF274856.1-202ENST00000509345 871 ntTSL 4 BASIC15.61■□□□□ 0.09
COL6A3P12111 AC004231.3-201ENST00000579136 258 ntTSL 3 BASIC15.61■□□□□ 0.09
COL6A3P12111 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
COL6A3P12111 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
COL6A3P12111 PGR-209ENST00000617858 2816 ntTSL 5 BASIC15.61■□□□□ 0.09
COL6A3P12111 AC007491.1-201ENST00000637560 1306 ntTSL 5 BASIC15.61■□□□□ 0.09
COL6A3P12111 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
COL6A3P12111 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
COL6A3P12111 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
COL6A3P12111 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
COL6A3P12111 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
COL6A3P12111 ASCC2-201ENST00000307790 2793 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
COL6A3P12111 TMEM60-201ENST00000257663 1023 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
COL6A3P12111 RN7SKP109-201ENST00000410592 316 ntBASIC15.61■□□□□ 0.09
COL6A3P12111 AC013448.2-201ENST00000440341 787 ntTSL 5 BASIC15.61■□□□□ 0.09
COL6A3P12111 C1orf198-207ENST00000523410 1041 ntAPPRIS ALT2 TSL 2 BASIC15.61■□□□□ 0.09
COL6A3P12111 RN7SL602P-201ENST00000578326 324 ntBASIC15.61■□□□□ 0.09
COL6A3P12111 RN7SL718P-201ENST00000581254 303 ntBASIC15.61■□□□□ 0.09
COL6A3P12111 AC020934.2-201ENST00000592400 456 ntTSL 3 BASIC15.61■□□□□ 0.09
COL6A3P12111 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
COL6A3P12111 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC15.61■□□□□ 0.09
COL6A3P12111 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
COL6A3P12111 METTL17-201ENST00000339374 1749 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
COL6A3P12111 LINC01144-201ENST00000626198 1710 ntBASIC15.61■□□□□ 0.09
COL6A3P12111 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC15.61■□□□□ 0.09
COL6A3P12111 LAIR1-209ENST00000434277 1645 ntAPPRIS ALT2 TSL 2 BASIC15.61■□□□□ 0.09
COL6A3P12111 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
COL6A3P12111 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
COL6A3P12111 SERPINF1-201ENST00000254722 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
COL6A3P12111 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC15.61■□□□□ 0.09
COL6A3P12111 AC090136.2-201ENST00000517809 420 ntBASIC15.61■□□□□ 0.09
COL6A3P12111 LINC02417-201ENST00000542449 515 ntTSL 2 BASIC15.61■□□□□ 0.09
COL6A3P12111 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
COL6A3P12111 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
COL6A3P12111 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
COL6A3P12111 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC15.6■□□□□ 0.09
COL6A3P12111 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC15.6■□□□□ 0.09
COL6A3P12111 CFAP20-201ENST00000262498 1354 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
COL6A3P12111 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
COL6A3P12111 MINDY4B-201ENST00000465419 1383 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
COL6A3P12111 ANXA8L1-202ENST00000611655 1398 ntTSL 2 BASIC15.6■□□□□ 0.09
COL6A3P12111 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
COL6A3P12111 MRPL18-201ENST00000367034 978 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
COL6A3P12111 RN7SL582P-201ENST00000491078 279 ntBASIC15.6■□□□□ 0.09
COL6A3P12111 TARM1-202ENST00000616041 1218 ntAPPRIS ALT2 TSL 2 BASIC15.6■□□□□ 0.09
COL6A3P12111 AC009145.4-201ENST00000625119 1294 ntBASIC15.6■□□□□ 0.09
COL6A3P12111 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC15.6■□□□□ 0.09
COL6A3P12111 GNE-204ENST00000539208 2190 ntTSL 2 BASIC15.6■□□□□ 0.09
COL6A3P12111 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
COL6A3P12111 SUPT4H1-201ENST00000225504 1489 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
COL6A3P12111 AP001282.1-201ENST00000531301 1499 ntBASIC15.6■□□□□ 0.09
COL6A3P12111 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
COL6A3P12111 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
COL6A3P12111 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC15.6■□□□□ 0.09
COL6A3P12111 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
COL6A3P12111 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC15.6■□□□□ 0.09
COL6A3P12111 LINC00665-205ENST00000585356 1557 ntTSL 2 BASIC15.6■□□□□ 0.09
COL6A3P12111 CYP4F23P-201ENST00000593402 1579 ntBASIC15.6■□□□□ 0.09
COL6A3P12111 AL355803.1-201ENST00000455524 188 ntTSL 2 BASIC15.6■□□□□ 0.09
COL6A3P12111 ABCC6P2-201ENST00000526069 590 ntBASIC15.6■□□□□ 0.09
COL6A3P12111 AP000769.1-203ENST00000637245 208 ntBASIC15.6■□□□□ 0.09
COL6A3P12111 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC15.6■□□□□ 0.09
COL6A3P12111 EFHD1-207ENST00000611312 1490 ntTSL 5 BASIC15.6■□□□□ 0.09
COL6A3P12111 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
COL6A3P12111 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC15.6■□□□□ 0.09
COL6A3P12111 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
COL6A3P12111 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
COL6A3P12111 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC15.59■□□□□ 0.09
COL6A3P12111 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC15.59■□□□□ 0.09
COL6A3P12111 XAGE2-201ENST00000286049 618 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
COL6A3P12111 OR51A9P-201ENST00000422578 911 ntBASIC15.59■□□□□ 0.09
COL6A3P12111 FDPSP7-201ENST00000429043 1054 ntBASIC15.59■□□□□ 0.09
COL6A3P12111 FAM157A-201ENST00000437428 1141 ntTSL 3 BASIC15.59■□□□□ 0.09
COL6A3P12111 RN7SL69P-201ENST00000468423 272 ntBASIC15.59■□□□□ 0.09
COL6A3P12111 AC026412.1-206ENST00000502273 206 ntBASIC15.59■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 76.2 ms