Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
HMGB1P09429 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC18.25■□□□□ 0.51
HMGB1P09429 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC18.25■□□□□ 0.51
HMGB1P09429 RN7SL399P-201ENST00000471648 279 ntBASIC18.25■□□□□ 0.51
HMGB1P09429 FAM86LP-201ENST00000478302 853 ntBASIC18.25■□□□□ 0.51
HMGB1P09429 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC18.25■□□□□ 0.51
HMGB1P09429 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC18.25■□□□□ 0.51
HMGB1P09429 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
HMGB1P09429 AC023310.3-201ENST00000557027 670 ntBASIC18.25■□□□□ 0.51
HMGB1P09429 AC100756.1-201ENST00000562736 682 ntBASIC18.25■□□□□ 0.51
HMGB1P09429 AC138749.3-201ENST00000567691 622 ntBASIC18.25■□□□□ 0.51
HMGB1P09429 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HMGB1P09429 AC116165.1-201ENST00000611806 668 ntBASIC18.25■□□□□ 0.51
HMGB1P09429 AC009118.2-201ENST00000613275 655 ntBASIC18.25■□□□□ 0.51
HMGB1P09429 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC18.25■□□□□ 0.51
HMGB1P09429 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC18.25■□□□□ 0.51
HMGB1P09429 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HMGB1P09429 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HMGB1P09429 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
HMGB1P09429 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HMGB1P09429 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC18.25■□□□□ 0.51
HMGB1P09429 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HMGB1P09429 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
HMGB1P09429 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HMGB1P09429 AP000845.1-201ENST00000581677 2131 ntBASIC18.25■□□□□ 0.51
HMGB1P09429 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
HMGB1P09429 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HMGB1P09429 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
HMGB1P09429 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
HMGB1P09429 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
HMGB1P09429 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC18.24■□□□□ 0.51
HMGB1P09429 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
HMGB1P09429 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
HMGB1P09429 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC18.24■□□□□ 0.51
HMGB1P09429 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
HMGB1P09429 REXO1L4P-201ENST00000605109 1937 ntBASIC18.24■□□□□ 0.51
HMGB1P09429 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
HMGB1P09429 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
HMGB1P09429 SPDYE19P-201ENST00000338590 713 ntBASIC18.24■□□□□ 0.51
HMGB1P09429 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
HMGB1P09429 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC18.24■□□□□ 0.51
HMGB1P09429 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC18.24■□□□□ 0.51
HMGB1P09429 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.51
HMGB1P09429 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC18.24■□□□□ 0.51
HMGB1P09429 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC18.24■□□□□ 0.51
HMGB1P09429 RPL13AP25-201ENST00000484130 612 ntBASIC18.24■□□□□ 0.51
HMGB1P09429 AC004066.1-201ENST00000502488 802 ntBASIC18.24■□□□□ 0.51
HMGB1P09429 AC093004.1-201ENST00000508850 424 ntBASIC18.24■□□□□ 0.51
HMGB1P09429 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC18.24■□□□□ 0.51
HMGB1P09429 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC18.24■□□□□ 0.51
HMGB1P09429 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
HMGB1P09429 SAMD11P1-201ENST00000571429 661 ntBASIC18.24■□□□□ 0.51
HMGB1P09429 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC18.24■□□□□ 0.51
HMGB1P09429 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC18.24■□□□□ 0.51
HMGB1P09429 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC18.24■□□□□ 0.51
HMGB1P09429 AC099568.2-201ENST00000609194 695 ntBASIC18.24■□□□□ 0.51
HMGB1P09429 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC18.24■□□□□ 0.51
HMGB1P09429 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
HMGB1P09429 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
HMGB1P09429 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
HMGB1P09429 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
HMGB1P09429 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC18.24■□□□□ 0.51
HMGB1P09429 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
HMGB1P09429 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
HMGB1P09429 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
HMGB1P09429 LINC01101-201ENST00000622953 1884 ntBASIC18.24■□□□□ 0.51
HMGB1P09429 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
HMGB1P09429 REXO1L2P-201ENST00000425429 2069 ntBASIC18.24■□□□□ 0.51
HMGB1P09429 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
HMGB1P09429 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
HMGB1P09429 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
HMGB1P09429 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
HMGB1P09429 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC18.24■□□□□ 0.51
HMGB1P09429 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC18.24■□□□□ 0.51
HMGB1P09429 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
HMGB1P09429 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC18.23■□□□□ 0.51
HMGB1P09429 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC18.23■□□□□ 0.51
HMGB1P09429 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC18.23■□□□□ 0.51
HMGB1P09429 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
HMGB1P09429 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC18.23■□□□□ 0.51
HMGB1P09429 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
HMGB1P09429 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
HMGB1P09429 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HMGB1P09429 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
HMGB1P09429 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
HMGB1P09429 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC18.23■□□□□ 0.51
HMGB1P09429 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
HMGB1P09429 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC18.23■□□□□ 0.51
HMGB1P09429 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC18.23■□□□□ 0.51
HMGB1P09429 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HMGB1P09429 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HMGB1P09429 MIR770-201ENST00000390219 98 ntBASIC18.23■□□□□ 0.51
HMGB1P09429 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HMGB1P09429 MPV17-208ENST00000405076 603 ntTSL 5 BASIC18.23■□□□□ 0.51
HMGB1P09429 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC18.23■□□□□ 0.51
HMGB1P09429 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
HMGB1P09429 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC18.23■□□□□ 0.51
HMGB1P09429 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC18.23■□□□□ 0.51
HMGB1P09429 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC18.23■□□□□ 0.51
HMGB1P09429 AC027796.2-201ENST00000575326 344 ntBASIC18.23■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 60.9 ms