Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 POLD1-214ENST00000613923 3542 ntTSL 5 BASIC12.07□□□□□ -0.48
CXCL1P09341 STK40-201ENST00000359297 4837 ntTSL 2 BASIC12.07□□□□□ -0.48
CXCL1P09341 WASHC5-202ENST00000517845 3667 ntTSL 2 BASIC12.07□□□□□ -0.48
CXCL1P09341 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC12.07□□□□□ -0.48
CXCL1P09341 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
CXCL1P09341 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC12.07□□□□□ -0.48
CXCL1P09341 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC12.07□□□□□ -0.48
CXCL1P09341 AC127383.1-201ENST00000444697 1800 ntBASIC12.07□□□□□ -0.48
CXCL1P09341 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC12.07□□□□□ -0.48
CXCL1P09341 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC12.07□□□□□ -0.48
CXCL1P09341 AC023090.2-201ENST00000625182 2110 ntBASIC12.07□□□□□ -0.48
CXCL1P09341 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
CXCL1P09341 RBSN-207ENST00000476527 3005 ntAPPRIS P1 TSL 2 BASIC12.07□□□□□ -0.48
CXCL1P09341 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC12.07□□□□□ -0.48
CXCL1P09341 DPM2-202ENST00000373110 738 ntTSL 2 BASIC12.07□□□□□ -0.48
CXCL1P09341 CTIF-202ENST00000382998 4407 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
CXCL1P09341 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
CXCL1P09341 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC12.07□□□□□ -0.48
CXCL1P09341 NR4A2-209ENST00000426264 2642 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
CXCL1P09341 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC12.07□□□□□ -0.48
CXCL1P09341 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC12.07□□□□□ -0.48
CXCL1P09341 FAM86EP-206ENST00000510506 987 ntBASIC12.07□□□□□ -0.48
CXCL1P09341 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC12.07□□□□□ -0.48
CXCL1P09341 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC12.07□□□□□ -0.48
CXCL1P09341 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC12.07□□□□□ -0.48
CXCL1P09341 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC12.07□□□□□ -0.48
CXCL1P09341 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
CXCL1P09341 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC12.07□□□□□ -0.48
CXCL1P09341 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC12.07□□□□□ -0.48
CXCL1P09341 MPI-205ENST00000562606 1052 ntTSL 3 BASIC12.07□□□□□ -0.48
CXCL1P09341 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC12.07□□□□□ -0.48
CXCL1P09341 AC004706.3-202ENST00000621574 984 ntBASIC12.07□□□□□ -0.48
CXCL1P09341 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC12.07□□□□□ -0.48
CXCL1P09341 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC12.07□□□□□ -0.48
CXCL1P09341 BRSK1-206ENST00000590333 2977 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
CXCL1P09341 RUFY4-201ENST00000344321 2352 ntAPPRIS P1 TSL 5 BASIC12.07□□□□□ -0.48
CXCL1P09341 WIZ-202ENST00000389282 4067 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
CXCL1P09341 RASSF3-204ENST00000542104 3492 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
CXCL1P09341 TMEM63B-202ENST00000323267 3198 ntAPPRIS P1 TSL 5 BASIC12.07□□□□□ -0.48
CXCL1P09341 MGAT1-205ENST00000446023 3175 ntAPPRIS P1 TSL 2 BASIC12.07□□□□□ -0.48
CXCL1P09341 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
CXCL1P09341 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC12.07□□□□□ -0.48
CXCL1P09341 CFLAR-206ENST00000395148 4415 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
CXCL1P09341 CENPBD1-201ENST00000314994 2744 ntAPPRIS P1 BASIC12.07□□□□□ -0.48
CXCL1P09341 C1QTNF1-203ENST00000354124 2714 ntAPPRIS P1 TSL 4 BASIC12.07□□□□□ -0.48
CXCL1P09341 GPT2-201ENST00000340124 3984 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
CXCL1P09341 ACTN2-206ENST00000542672 4906 ntAPPRIS ALT1 TSL 1 (best) BASIC12.07□□□□□ -0.48
CXCL1P09341 ZFP36L2-201ENST00000282388 3696 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
CXCL1P09341 NBPF26-208ENST00000620612 4602 ntAPPRIS P1 TSL 5 BASIC12.07□□□□□ -0.48
CXCL1P09341 CILP2-201ENST00000291495 4199 ntAPPRIS P2 TSL 1 (best) BASIC12.07□□□□□ -0.48
CXCL1P09341 TRMT2B-203ENST00000372939 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
CXCL1P09341 PISD-209ENST00000439502 1963 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
CXCL1P09341 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC12.07□□□□□ -0.48
CXCL1P09341 CERS6-202ENST00000392687 6851 ntAPPRIS ALT1 TSL 1 (best) BASIC12.07□□□□□ -0.48
CXCL1P09341 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC12.07□□□□□ -0.48
CXCL1P09341 IL1RL2-201ENST00000264257 2615 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
CXCL1P09341 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC12.06□□□□□ -0.48
CXCL1P09341 KRT75-201ENST00000252245 2324 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
CXCL1P09341 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC12.06□□□□□ -0.48
CXCL1P09341 CFAP74-209ENST00000493964 5247 ntAPPRIS P5 TSL 5 BASIC12.06□□□□□ -0.48
CXCL1P09341 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC12.06□□□□□ -0.48
CXCL1P09341 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC12.06□□□□□ -0.48
CXCL1P09341 SLC9A3P2-201ENST00000447821 2021 ntBASIC12.06□□□□□ -0.48
CXCL1P09341 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC12.06□□□□□ -0.48
CXCL1P09341 ADAR-202ENST00000368474 6625 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
CXCL1P09341 UHRF1BP1L-201ENST00000279907 5168 ntAPPRIS P4 TSL 1 (best) BASIC12.06□□□□□ -0.48
CXCL1P09341 NUTM2G-201ENST00000354649 2851 ntAPPRIS P3 TSL 5 BASIC12.06□□□□□ -0.48
CXCL1P09341 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC12.06□□□□□ -0.48
CXCL1P09341 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC12.06□□□□□ -0.48
CXCL1P09341 EBLN3P-202ENST00000625445 4520 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
CXCL1P09341 CACNA2D1-201ENST00000356253 3858 ntTSL 5 BASIC12.06□□□□□ -0.48
CXCL1P09341 SPTLC2-201ENST00000216484 8170 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
CXCL1P09341 AC016245.1-201ENST00000570335 3204 ntTSL 2 BASIC12.06□□□□□ -0.48
CXCL1P09341 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC12.06□□□□□ -0.48
CXCL1P09341 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC12.06□□□□□ -0.48
CXCL1P09341 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
CXCL1P09341 C7orf65-201ENST00000408988 2911 ntTSL 2 BASIC12.06□□□□□ -0.48
CXCL1P09341 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC12.06□□□□□ -0.48
CXCL1P09341 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
CXCL1P09341 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC12.06□□□□□ -0.48
CXCL1P09341 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
CXCL1P09341 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC12.06□□□□□ -0.48
CXCL1P09341 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
CXCL1P09341 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC12.06□□□□□ -0.48
CXCL1P09341 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC12.06□□□□□ -0.48
CXCL1P09341 SLC25A6P2-201ENST00000497974 877 ntBASIC12.06□□□□□ -0.48
CXCL1P09341 AC107918.2-201ENST00000530817 355 ntBASIC12.06□□□□□ -0.48
CXCL1P09341 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
CXCL1P09341 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC12.06□□□□□ -0.48
CXCL1P09341 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC12.06□□□□□ -0.48
CXCL1P09341 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC12.06□□□□□ -0.48
CXCL1P09341 AC099336.1-202ENST00000602961 463 ntBASIC12.06□□□□□ -0.48
CXCL1P09341 AP001269.4-201ENST00000609611 512 ntBASIC12.06□□□□□ -0.48
CXCL1P09341 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC12.06□□□□□ -0.48
CXCL1P09341 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC12.06□□□□□ -0.48
CXCL1P09341 WASHC2A-202ENST00000314664 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
CXCL1P09341 AC114271.1-201ENST00000612689 2813 ntBASIC12.06□□□□□ -0.48
CXCL1P09341 NCKAP5L-201ENST00000335999 4900 ntAPPRIS P1 TSL 5 BASIC12.06□□□□□ -0.48
CXCL1P09341 LIG1-202ENST00000427526 3027 ntAPPRIS ALT2 TSL 2 BASIC12.06□□□□□ -0.48
CXCL1P09341 ABCB9-203ENST00000346530 3399 ntTSL 5 BASIC12.06□□□□□ -0.48
Retrieved 100 of 98,524 protein–RNA pairs in 48.4 ms