Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC17.29■□□□□ 0.36
MSH4O15457 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
MSH4O15457 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC17.29■□□□□ 0.36
MSH4O15457 GNRHR2-203ENST00000581100 1187 ntBASIC17.29■□□□□ 0.36
MSH4O15457 AL512343.1-201ENST00000605837 169 ntBASIC17.29■□□□□ 0.36
MSH4O15457 AL022328.1-201ENST00000610050 478 ntBASIC17.29■□□□□ 0.36
MSH4O15457 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
MSH4O15457 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
MSH4O15457 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC17.29■□□□□ 0.36
MSH4O15457 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
MSH4O15457 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC17.29■□□□□ 0.36
MSH4O15457 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC17.29■□□□□ 0.36
MSH4O15457 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC17.29■□□□□ 0.36
MSH4O15457 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
MSH4O15457 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
MSH4O15457 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC17.29■□□□□ 0.36
MSH4O15457 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
MSH4O15457 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
MSH4O15457 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
MSH4O15457 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
MSH4O15457 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
MSH4O15457 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
MSH4O15457 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC17.29■□□□□ 0.36
MSH4O15457 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC17.29■□□□□ 0.36
MSH4O15457 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
MSH4O15457 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
MSH4O15457 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
MSH4O15457 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
MSH4O15457 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
MSH4O15457 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
MSH4O15457 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
MSH4O15457 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
MSH4O15457 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
MSH4O15457 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
MSH4O15457 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
MSH4O15457 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
MSH4O15457 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
MSH4O15457 KRT8P35-201ENST00000483942 1338 ntBASIC17.28■□□□□ 0.36
MSH4O15457 AL157414.3-201ENST00000624276 1954 ntBASIC17.28■□□□□ 0.36
MSH4O15457 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
MSH4O15457 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
MSH4O15457 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
MSH4O15457 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
MSH4O15457 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
MSH4O15457 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
MSH4O15457 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
MSH4O15457 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
MSH4O15457 GK-202ENST00000378941 458 ntTSL 3 BASIC17.28■□□□□ 0.36
MSH4O15457 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
MSH4O15457 HIST1H2BPS3-201ENST00000419683 341 ntBASIC17.28■□□□□ 0.36
MSH4O15457 HLA-K-203ENST00000430151 1046 ntBASIC17.28■□□□□ 0.36
MSH4O15457 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC17.28■□□□□ 0.36
MSH4O15457 AL355864.2-201ENST00000447420 863 ntBASIC17.28■□□□□ 0.36
MSH4O15457 ACA64.2-201ENST00000459014 129 ntBASIC17.28■□□□□ 0.36
MSH4O15457 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC17.28■□□□□ 0.36
MSH4O15457 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
MSH4O15457 PUDP-206ENST00000540122 825 ntTSL 2 BASIC17.28■□□□□ 0.36
MSH4O15457 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC17.28■□□□□ 0.36
MSH4O15457 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC17.28■□□□□ 0.36
MSH4O15457 RAB43P1-201ENST00000561790 589 ntBASIC17.28■□□□□ 0.36
MSH4O15457 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC17.28■□□□□ 0.36
MSH4O15457 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
MSH4O15457 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
MSH4O15457 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
MSH4O15457 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC17.28■□□□□ 0.36
MSH4O15457 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC17.28■□□□□ 0.36
MSH4O15457 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
MSH4O15457 REXO1L5P-201ENST00000622260 2098 ntBASIC17.28■□□□□ 0.36
MSH4O15457 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
MSH4O15457 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
MSH4O15457 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
MSH4O15457 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC17.28■□□□□ 0.36
MSH4O15457 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC17.28■□□□□ 0.36
MSH4O15457 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC17.28■□□□□ 0.36
MSH4O15457 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
MSH4O15457 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
MSH4O15457 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
MSH4O15457 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
MSH4O15457 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
MSH4O15457 AP000845.1-201ENST00000581677 2131 ntBASIC17.27■□□□□ 0.36
MSH4O15457 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
MSH4O15457 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.36
MSH4O15457 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC17.27■□□□□ 0.36
MSH4O15457 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
MSH4O15457 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
MSH4O15457 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
MSH4O15457 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC17.27■□□□□ 0.36
MSH4O15457 AL360270.3-201ENST00000609118 1348 ntBASIC17.27■□□□□ 0.36
MSH4O15457 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
MSH4O15457 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
MSH4O15457 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
MSH4O15457 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
MSH4O15457 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
MSH4O15457 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC17.27■□□□□ 0.36
MSH4O15457 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC17.27■□□□□ 0.36
MSH4O15457 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
MSH4O15457 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
MSH4O15457 OR8S1-201ENST00000310194 1080 ntBASIC17.27■□□□□ 0.36
MSH4O15457 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC17.27■□□□□ 0.36
MSH4O15457 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC17.27■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms