Protein–RNA interactions for Protein: Q9Y3P4

RHBDD3, Rhomboid domain-containing protein 3, humanhuman

Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDD3Q9Y3P4 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC13.65□□□□□ -0.22
RHBDD3Q9Y3P4 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC13.65□□□□□ -0.22
RHBDD3Q9Y3P4 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC13.65□□□□□ -0.22
RHBDD3Q9Y3P4 PHLDB2-203ENST00000412622 5996 ntTSL 5 BASIC13.65□□□□□ -0.22
RHBDD3Q9Y3P4 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
RHBDD3Q9Y3P4 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
RHBDD3Q9Y3P4 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
RHBDD3Q9Y3P4 SEPT7-201ENST00000350320 4350 ntAPPRIS P5 TSL 5 BASIC13.65□□□□□ -0.22
RHBDD3Q9Y3P4 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC13.65□□□□□ -0.22
RHBDD3Q9Y3P4 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
RHBDD3Q9Y3P4 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
RHBDD3Q9Y3P4 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.23
RHBDD3Q9Y3P4 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.23
RHBDD3Q9Y3P4 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
RHBDD3Q9Y3P4 AL390755.1-201ENST00000623716 2027 ntBASIC13.64□□□□□ -0.23
RHBDD3Q9Y3P4 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
RHBDD3Q9Y3P4 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
RHBDD3Q9Y3P4 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC13.64□□□□□ -0.23
RHBDD3Q9Y3P4 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
RHBDD3Q9Y3P4 AL009178.2-201ENST00000597278 2719 ntBASIC13.64□□□□□ -0.23
RHBDD3Q9Y3P4 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
RHBDD3Q9Y3P4 MTMR6-201ENST00000381801 5659 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
RHBDD3Q9Y3P4 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
RHBDD3Q9Y3P4 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
RHBDD3Q9Y3P4 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC13.64□□□□□ -0.23
RHBDD3Q9Y3P4 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
RHBDD3Q9Y3P4 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC13.64□□□□□ -0.23
RHBDD3Q9Y3P4 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC13.64□□□□□ -0.23
RHBDD3Q9Y3P4 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
RHBDD3Q9Y3P4 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC13.64□□□□□ -0.23
RHBDD3Q9Y3P4 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
RHBDD3Q9Y3P4 KLK8-202ENST00000320838 456 ntTSL 5 BASIC13.64□□□□□ -0.23
RHBDD3Q9Y3P4 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC13.64□□□□□ -0.23
RHBDD3Q9Y3P4 AZGP1P1-201ENST00000411909 902 ntBASIC13.64□□□□□ -0.23
RHBDD3Q9Y3P4 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC13.64□□□□□ -0.23
RHBDD3Q9Y3P4 MTND6P24-201ENST00000440466 518 ntBASIC13.64□□□□□ -0.23
RHBDD3Q9Y3P4 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC13.64□□□□□ -0.23
RHBDD3Q9Y3P4 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC13.64□□□□□ -0.23
RHBDD3Q9Y3P4 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC13.64□□□□□ -0.23
RHBDD3Q9Y3P4 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
RHBDD3Q9Y3P4 SPIB-207ENST00000597855 564 ntTSL 4 BASIC13.64□□□□□ -0.23
RHBDD3Q9Y3P4 AC027612.4-201ENST00000605371 583 ntBASIC13.64□□□□□ -0.23
RHBDD3Q9Y3P4 AP001059.3-201ENST00000619053 235 ntBASIC13.64□□□□□ -0.23
RHBDD3Q9Y3P4 RER1-203ENST00000378513 3000 ntTSL 3 BASIC13.64□□□□□ -0.23
RHBDD3Q9Y3P4 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
RHBDD3Q9Y3P4 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC13.64□□□□□ -0.23
RHBDD3Q9Y3P4 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC13.64□□□□□ -0.23
RHBDD3Q9Y3P4 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
RHBDD3Q9Y3P4 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC13.64□□□□□ -0.23
RHBDD3Q9Y3P4 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
RHBDD3Q9Y3P4 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
RHBDD3Q9Y3P4 DHX36-213ENST00000496811 6733 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
RHBDD3Q9Y3P4 ST20-AS1-201ENST00000560255 4223 ntBASIC13.64□□□□□ -0.23
RHBDD3Q9Y3P4 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC13.64□□□□□ -0.23
RHBDD3Q9Y3P4 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC13.64□□□□□ -0.23
RHBDD3Q9Y3P4 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
RHBDD3Q9Y3P4 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC13.64□□□□□ -0.23
RHBDD3Q9Y3P4 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
RHBDD3Q9Y3P4 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
RHBDD3Q9Y3P4 FERMT1-201ENST00000217289 5151 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
RHBDD3Q9Y3P4 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC13.63□□□□□ -0.23
RHBDD3Q9Y3P4 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC13.63□□□□□ -0.23
RHBDD3Q9Y3P4 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
RHBDD3Q9Y3P4 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
RHBDD3Q9Y3P4 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
RHBDD3Q9Y3P4 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC13.63□□□□□ -0.23
RHBDD3Q9Y3P4 PTPRU-204ENST00000428026 5550 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
RHBDD3Q9Y3P4 UBR2-201ENST00000372899 7857 ntAPPRIS P2 TSL 1 (best) BASIC13.63□□□□□ -0.23
RHBDD3Q9Y3P4 UBR2-202ENST00000372901 7857 ntAPPRIS ALT1 TSL 5 BASIC13.63□□□□□ -0.23
RHBDD3Q9Y3P4 GRM1-201ENST00000282753 6622 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
RHBDD3Q9Y3P4 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
RHBDD3Q9Y3P4 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
RHBDD3Q9Y3P4 AL035456.1-201ENST00000456064 1369 ntBASIC13.63□□□□□ -0.23
RHBDD3Q9Y3P4 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
RHBDD3Q9Y3P4 NOP9-201ENST00000267425 6033 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
RHBDD3Q9Y3P4 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
RHBDD3Q9Y3P4 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
RHBDD3Q9Y3P4 RPS19-201ENST00000221975 500 ntTSL 3 BASIC13.63□□□□□ -0.23
RHBDD3Q9Y3P4 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
RHBDD3Q9Y3P4 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
RHBDD3Q9Y3P4 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC13.63□□□□□ -0.23
RHBDD3Q9Y3P4 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC13.63□□□□□ -0.23
RHBDD3Q9Y3P4 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC13.63□□□□□ -0.23
RHBDD3Q9Y3P4 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
RHBDD3Q9Y3P4 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
RHBDD3Q9Y3P4 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC13.63□□□□□ -0.23
RHBDD3Q9Y3P4 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC13.63□□□□□ -0.23
RHBDD3Q9Y3P4 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC13.63□□□□□ -0.23
RHBDD3Q9Y3P4 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC13.63□□□□□ -0.23
RHBDD3Q9Y3P4 AC097359.3-201ENST00000603982 1210 ntBASIC13.63□□□□□ -0.23
RHBDD3Q9Y3P4 AL133215.2-201ENST00000609242 977 ntBASIC13.63□□□□□ -0.23
RHBDD3Q9Y3P4 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
RHBDD3Q9Y3P4 STRN-202ENST00000379213 2254 ntTSL 5 BASIC13.63□□□□□ -0.23
RHBDD3Q9Y3P4 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
RHBDD3Q9Y3P4 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC13.63□□□□□ -0.23
RHBDD3Q9Y3P4 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC13.63□□□□□ -0.23
RHBDD3Q9Y3P4 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC13.63□□□□□ -0.23
RHBDD3Q9Y3P4 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC13.63□□□□□ -0.23
RHBDD3Q9Y3P4 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC13.63□□□□□ -0.23
RHBDD3Q9Y3P4 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms