Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
FOXA2Q9Y261 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC12.59□□□□□ -0.39
FOXA2Q9Y261 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
FOXA2Q9Y261 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
FOXA2Q9Y261 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.39
FOXA2Q9Y261 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
FOXA2Q9Y261 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC12.58□□□□□ -0.4
FOXA2Q9Y261 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC12.58□□□□□ -0.4
FOXA2Q9Y261 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC12.58□□□□□ -0.4
FOXA2Q9Y261 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
FOXA2Q9Y261 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC12.58□□□□□ -0.4
FOXA2Q9Y261 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC12.58□□□□□ -0.4
FOXA2Q9Y261 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC12.58□□□□□ -0.4
FOXA2Q9Y261 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC12.58□□□□□ -0.4
FOXA2Q9Y261 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
FOXA2Q9Y261 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC12.58□□□□□ -0.4
FOXA2Q9Y261 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
FOXA2Q9Y261 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.4
FOXA2Q9Y261 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC12.58□□□□□ -0.4
FOXA2Q9Y261 CYP1B1-205ENST00000610745 5250 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
FOXA2Q9Y261 SEMA4F-210ENST00000611975 6007 ntTSL 5 BASIC12.58□□□□□ -0.4
FOXA2Q9Y261 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
FOXA2Q9Y261 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC12.58□□□□□ -0.4
FOXA2Q9Y261 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
FOXA2Q9Y261 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC12.58□□□□□ -0.4
FOXA2Q9Y261 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC12.58□□□□□ -0.4
FOXA2Q9Y261 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC12.58□□□□□ -0.4
FOXA2Q9Y261 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
FOXA2Q9Y261 MIR943-201ENST00000401286 94 ntBASIC12.58□□□□□ -0.4
FOXA2Q9Y261 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC12.58□□□□□ -0.4
FOXA2Q9Y261 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC12.58□□□□□ -0.4
FOXA2Q9Y261 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC12.58□□□□□ -0.4
FOXA2Q9Y261 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
FOXA2Q9Y261 IGHV3-42-201ENST00000520410 361 ntBASIC12.58□□□□□ -0.4
FOXA2Q9Y261 RFPL4AP1-201ENST00000530883 850 ntBASIC12.58□□□□□ -0.4
FOXA2Q9Y261 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
FOXA2Q9Y261 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
FOXA2Q9Y261 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
FOXA2Q9Y261 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
FOXA2Q9Y261 AL079307.3-201ENST00000556114 283 ntBASIC12.58□□□□□ -0.4
FOXA2Q9Y261 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC12.58□□□□□ -0.4
FOXA2Q9Y261 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC12.58□□□□□ -0.4
FOXA2Q9Y261 LINC00528-201ENST00000600723 2160 ntBASIC12.58□□□□□ -0.4
FOXA2Q9Y261 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC12.58□□□□□ -0.4
FOXA2Q9Y261 AL133215.2-201ENST00000609242 977 ntBASIC12.58□□□□□ -0.4
FOXA2Q9Y261 FGD5P1-202ENST00000614866 2498 ntBASIC12.58□□□□□ -0.4
FOXA2Q9Y261 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC12.58□□□□□ -0.4
FOXA2Q9Y261 AL390755.1-201ENST00000623716 2027 ntBASIC12.58□□□□□ -0.4
FOXA2Q9Y261 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
FOXA2Q9Y261 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC12.58□□□□□ -0.4
FOXA2Q9Y261 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
FOXA2Q9Y261 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
FOXA2Q9Y261 AC097376.2-205ENST00000610159 5334 ntBASIC12.58□□□□□ -0.4
FOXA2Q9Y261 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
FOXA2Q9Y261 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.4
FOXA2Q9Y261 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
FOXA2Q9Y261 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC12.58□□□□□ -0.4
FOXA2Q9Y261 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
FOXA2Q9Y261 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
FOXA2Q9Y261 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
FOXA2Q9Y261 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
FOXA2Q9Y261 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC12.58□□□□□ -0.4
FOXA2Q9Y261 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
FOXA2Q9Y261 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
FOXA2Q9Y261 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
FOXA2Q9Y261 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
FOXA2Q9Y261 RALGPS2-204ENST00000367635 5834 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
FOXA2Q9Y261 TTC28-AS1-207ENST00000428584 5859 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
FOXA2Q9Y261 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
FOXA2Q9Y261 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC12.57□□□□□ -0.4
FOXA2Q9Y261 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
FOXA2Q9Y261 AC106881.1-201ENST00000605849 3329 ntBASIC12.57□□□□□ -0.4
FOXA2Q9Y261 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC12.57□□□□□ -0.4
FOXA2Q9Y261 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
FOXA2Q9Y261 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
FOXA2Q9Y261 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
FOXA2Q9Y261 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC12.57□□□□□ -0.4
FOXA2Q9Y261 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC12.57□□□□□ -0.4
FOXA2Q9Y261 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC12.57□□□□□ -0.4
FOXA2Q9Y261 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC12.57□□□□□ -0.4
FOXA2Q9Y261 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
FOXA2Q9Y261 ATP11B-201ENST00000323116 7325 ntAPPRIS P1 TSL 2 BASIC12.57□□□□□ -0.4
FOXA2Q9Y261 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
FOXA2Q9Y261 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC12.57□□□□□ -0.4
FOXA2Q9Y261 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
FOXA2Q9Y261 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC12.57□□□□□ -0.4
FOXA2Q9Y261 AL136379.1-201ENST00000623471 2642 ntBASIC12.57□□□□□ -0.4
FOXA2Q9Y261 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC12.57□□□□□ -0.4
FOXA2Q9Y261 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
FOXA2Q9Y261 VMA21-202ENST00000370361 693 ntTSL 5 BASIC12.57□□□□□ -0.4
FOXA2Q9Y261 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
FOXA2Q9Y261 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
FOXA2Q9Y261 FO393414.2-201ENST00000405153 598 ntBASIC12.57□□□□□ -0.4
FOXA2Q9Y261 SPDYE17-201ENST00000412399 783 ntBASIC12.57□□□□□ -0.4
FOXA2Q9Y261 FAM8A3P-201ENST00000427218 844 ntBASIC12.57□□□□□ -0.4
FOXA2Q9Y261 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
FOXA2Q9Y261 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
FOXA2Q9Y261 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
FOXA2Q9Y261 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC12.57□□□□□ -0.4
FOXA2Q9Y261 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 74 ms