Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
SIX2Q9NPC8 AC232323.1-201ENST00000540724 2099 ntBASIC16.58■□□□□ 0.24
SIX2Q9NPC8 REXO1L5P-201ENST00000622260 2098 ntBASIC16.58■□□□□ 0.24
SIX2Q9NPC8 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC16.58■□□□□ 0.24
SIX2Q9NPC8 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC16.58■□□□□ 0.24
SIX2Q9NPC8 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC16.58■□□□□ 0.24
SIX2Q9NPC8 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC16.58■□□□□ 0.24
SIX2Q9NPC8 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
SIX2Q9NPC8 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC16.57■□□□□ 0.24
SIX2Q9NPC8 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
SIX2Q9NPC8 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
SIX2Q9NPC8 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC16.57■□□□□ 0.24
SIX2Q9NPC8 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
SIX2Q9NPC8 USP35-204ENST00000530267 2419 ntTSL 2 BASIC16.57■□□□□ 0.24
SIX2Q9NPC8 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SIX2Q9NPC8 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
SIX2Q9NPC8 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
SIX2Q9NPC8 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC16.57■□□□□ 0.24
SIX2Q9NPC8 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC16.57■□□□□ 0.24
SIX2Q9NPC8 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SIX2Q9NPC8 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
SIX2Q9NPC8 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SIX2Q9NPC8 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
SIX2Q9NPC8 DRD5P1-201ENST00000456605 1438 ntBASIC16.57■□□□□ 0.24
SIX2Q9NPC8 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
SIX2Q9NPC8 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SIX2Q9NPC8 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
SIX2Q9NPC8 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SIX2Q9NPC8 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC16.57■□□□□ 0.24
SIX2Q9NPC8 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
SIX2Q9NPC8 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
SIX2Q9NPC8 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
SIX2Q9NPC8 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC16.57■□□□□ 0.24
SIX2Q9NPC8 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC16.57■□□□□ 0.24
SIX2Q9NPC8 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC16.57■□□□□ 0.24
SIX2Q9NPC8 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC16.57■□□□□ 0.24
SIX2Q9NPC8 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
SIX2Q9NPC8 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SIX2Q9NPC8 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC16.57■□□□□ 0.24
SIX2Q9NPC8 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC16.57■□□□□ 0.24
SIX2Q9NPC8 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
SIX2Q9NPC8 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SIX2Q9NPC8 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
SIX2Q9NPC8 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
SIX2Q9NPC8 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC16.57■□□□□ 0.24
SIX2Q9NPC8 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SIX2Q9NPC8 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
SIX2Q9NPC8 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SIX2Q9NPC8 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SIX2Q9NPC8 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC16.56■□□□□ 0.24
SIX2Q9NPC8 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC16.56■□□□□ 0.24
SIX2Q9NPC8 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC16.56■□□□□ 0.24
SIX2Q9NPC8 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SIX2Q9NPC8 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
SIX2Q9NPC8 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
SIX2Q9NPC8 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SIX2Q9NPC8 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
SIX2Q9NPC8 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
SIX2Q9NPC8 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
SIX2Q9NPC8 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
SIX2Q9NPC8 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
SIX2Q9NPC8 GGCT-205ENST00000409436 954 ntTSL 3 BASIC16.56■□□□□ 0.24
SIX2Q9NPC8 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC16.56■□□□□ 0.24
SIX2Q9NPC8 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC16.56■□□□□ 0.24
SIX2Q9NPC8 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC16.56■□□□□ 0.24
SIX2Q9NPC8 DUT-210ENST00000559935 569 ntTSL 3 BASIC16.56■□□□□ 0.24
SIX2Q9NPC8 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC16.56■□□□□ 0.24
SIX2Q9NPC8 RARRES2P5-201ENST00000564013 466 ntBASIC16.56■□□□□ 0.24
SIX2Q9NPC8 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC16.56■□□□□ 0.24
SIX2Q9NPC8 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
SIX2Q9NPC8 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC16.56■□□□□ 0.24
SIX2Q9NPC8 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC16.56■□□□□ 0.24
SIX2Q9NPC8 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC16.56■□□□□ 0.24
SIX2Q9NPC8 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC16.56■□□□□ 0.24
SIX2Q9NPC8 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
SIX2Q9NPC8 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
SIX2Q9NPC8 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC16.56■□□□□ 0.24
SIX2Q9NPC8 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
SIX2Q9NPC8 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
SIX2Q9NPC8 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC16.56■□□□□ 0.24
SIX2Q9NPC8 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC16.56■□□□□ 0.24
SIX2Q9NPC8 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
SIX2Q9NPC8 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
SIX2Q9NPC8 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
SIX2Q9NPC8 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
SIX2Q9NPC8 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC16.55■□□□□ 0.24
SIX2Q9NPC8 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
SIX2Q9NPC8 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
SIX2Q9NPC8 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC16.55■□□□□ 0.24
SIX2Q9NPC8 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SIX2Q9NPC8 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SIX2Q9NPC8 AL157414.3-201ENST00000624276 1954 ntBASIC16.55■□□□□ 0.24
SIX2Q9NPC8 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SIX2Q9NPC8 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
SIX2Q9NPC8 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SIX2Q9NPC8 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SIX2Q9NPC8 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SIX2Q9NPC8 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SIX2Q9NPC8 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC16.55■□□□□ 0.24
SIX2Q9NPC8 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 47.4 ms