Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC13.62□□□□□ -0.23
NKX3-1Q99801 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
NKX3-1Q99801 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
NKX3-1Q99801 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
NKX3-1Q99801 FAM219B-201ENST00000357635 3550 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
NKX3-1Q99801 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
NKX3-1Q99801 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC13.62□□□□□ -0.23
NKX3-1Q99801 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC13.62□□□□□ -0.23
NKX3-1Q99801 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
NKX3-1Q99801 MYH6-202ENST00000405093 5941 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
NKX3-1Q99801 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC13.62□□□□□ -0.23
NKX3-1Q99801 PDPK1-202ENST00000342085 7241 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
NKX3-1Q99801 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
NKX3-1Q99801 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
NKX3-1Q99801 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
NKX3-1Q99801 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
NKX3-1Q99801 LRRFIP1-204ENST00000392000 3365 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
NKX3-1Q99801 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
NKX3-1Q99801 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
NKX3-1Q99801 AC126365.1-201ENST00000578585 1514 ntBASIC13.61□□□□□ -0.23
NKX3-1Q99801 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
NKX3-1Q99801 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC13.61□□□□□ -0.23
NKX3-1Q99801 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
NKX3-1Q99801 AC232323.1-201ENST00000540724 2099 ntBASIC13.61□□□□□ -0.23
NKX3-1Q99801 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC13.61□□□□□ -0.23
NKX3-1Q99801 REXO1L5P-201ENST00000622260 2098 ntBASIC13.61□□□□□ -0.23
NKX3-1Q99801 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
NKX3-1Q99801 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
NKX3-1Q99801 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
NKX3-1Q99801 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
NKX3-1Q99801 RAC2-202ENST00000401529 569 ntTSL 4 BASIC13.61□□□□□ -0.23
NKX3-1Q99801 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
NKX3-1Q99801 AL671277.1-201ENST00000429656 993 ntBASIC13.61□□□□□ -0.23
NKX3-1Q99801 FAM58CP-201ENST00000435741 640 ntBASIC13.61□□□□□ -0.23
NKX3-1Q99801 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
NKX3-1Q99801 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC13.61□□□□□ -0.23
NKX3-1Q99801 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC13.61□□□□□ -0.23
NKX3-1Q99801 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC13.61□□□□□ -0.23
NKX3-1Q99801 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC13.61□□□□□ -0.23
NKX3-1Q99801 IGHV3OR16-6-201ENST00000568775 360 ntBASIC13.61□□□□□ -0.23
NKX3-1Q99801 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC13.61□□□□□ -0.23
NKX3-1Q99801 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC13.61□□□□□ -0.23
NKX3-1Q99801 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
NKX3-1Q99801 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC13.61□□□□□ -0.23
NKX3-1Q99801 AL450472.2-201ENST00000603663 1156 ntBASIC13.61□□□□□ -0.23
NKX3-1Q99801 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC13.61□□□□□ -0.23
NKX3-1Q99801 AC055717.3-201ENST00000622967 595 ntBASIC13.61□□□□□ -0.23
NKX3-1Q99801 AC079781.4-201ENST00000641908 219 ntBASIC13.61□□□□□ -0.23
NKX3-1Q99801 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
NKX3-1Q99801 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
NKX3-1Q99801 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
NKX3-1Q99801 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
NKX3-1Q99801 KIAA1468-202ENST00000398130 6178 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
NKX3-1Q99801 EYA4-205ENST00000430974 2364 ntTSL 2 BASIC13.61□□□□□ -0.23
NKX3-1Q99801 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC13.61□□□□□ -0.23
NKX3-1Q99801 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC13.61□□□□□ -0.23
NKX3-1Q99801 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
NKX3-1Q99801 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
NKX3-1Q99801 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC13.61□□□□□ -0.23
NKX3-1Q99801 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
NKX3-1Q99801 RIC1-201ENST00000251879 4127 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
NKX3-1Q99801 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC13.61□□□□□ -0.23
NKX3-1Q99801 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
NKX3-1Q99801 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
NKX3-1Q99801 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
NKX3-1Q99801 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC13.6□□□□□ -0.23
NKX3-1Q99801 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
NKX3-1Q99801 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC13.6□□□□□ -0.23
NKX3-1Q99801 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
NKX3-1Q99801 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC13.6□□□□□ -0.23
NKX3-1Q99801 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
NKX3-1Q99801 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC13.6□□□□□ -0.23
NKX3-1Q99801 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC13.6□□□□□ -0.23
NKX3-1Q99801 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
NKX3-1Q99801 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC13.6□□□□□ -0.23
NKX3-1Q99801 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC13.6□□□□□ -0.23
NKX3-1Q99801 ARRDC4-201ENST00000268042 4072 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
NKX3-1Q99801 GTF2IRD1-205ENST00000476977 5868 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
NKX3-1Q99801 AP3M2-201ENST00000174653 3661 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
NKX3-1Q99801 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
NKX3-1Q99801 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
NKX3-1Q99801 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
NKX3-1Q99801 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC13.6□□□□□ -0.23
NKX3-1Q99801 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
NKX3-1Q99801 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
NKX3-1Q99801 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC13.6□□□□□ -0.23
NKX3-1Q99801 HNRNPA1P28-201ENST00000424481 961 ntBASIC13.6□□□□□ -0.23
NKX3-1Q99801 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC13.6□□□□□ -0.23
NKX3-1Q99801 KRT8P48-201ENST00000515599 1220 ntBASIC13.6□□□□□ -0.23
NKX3-1Q99801 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC13.6□□□□□ -0.23
NKX3-1Q99801 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC13.6□□□□□ -0.23
NKX3-1Q99801 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
NKX3-1Q99801 AC024267.1-201ENST00000582320 895 ntBASIC13.6□□□□□ -0.23
NKX3-1Q99801 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC13.6□□□□□ -0.23
NKX3-1Q99801 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC13.6□□□□□ -0.23
NKX3-1Q99801 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC13.6□□□□□ -0.23
NKX3-1Q99801 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
NKX3-1Q99801 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
NKX3-1Q99801 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC13.6□□□□□ -0.23
NKX3-1Q99801 TDRD12-202ENST00000444215 3934 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms