Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CHMP4CQ96CF2 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
CHMP4CQ96CF2 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC18.53■□□□□ 0.56
CHMP4CQ96CF2 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC18.53■□□□□ 0.56
CHMP4CQ96CF2 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
CHMP4CQ96CF2 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CHMP4CQ96CF2 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CHMP4CQ96CF2 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC18.53■□□□□ 0.56
CHMP4CQ96CF2 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC18.53■□□□□ 0.56
CHMP4CQ96CF2 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CHMP4CQ96CF2 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CHMP4CQ96CF2 METTL26-204ENST00000397665 558 ntTSL 2 BASIC18.53■□□□□ 0.56
CHMP4CQ96CF2 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
CHMP4CQ96CF2 MYCLP2-201ENST00000449268 967 ntBASIC18.53■□□□□ 0.56
CHMP4CQ96CF2 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC18.53■□□□□ 0.56
CHMP4CQ96CF2 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC18.53■□□□□ 0.56
CHMP4CQ96CF2 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC18.53■□□□□ 0.56
CHMP4CQ96CF2 HNRNPUP1-201ENST00000554987 333 ntBASIC18.53■□□□□ 0.56
CHMP4CQ96CF2 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC18.53■□□□□ 0.56
CHMP4CQ96CF2 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC18.53■□□□□ 0.56
CHMP4CQ96CF2 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC18.53■□□□□ 0.56
CHMP4CQ96CF2 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC18.53■□□□□ 0.56
CHMP4CQ96CF2 AC097359.3-201ENST00000603982 1210 ntBASIC18.53■□□□□ 0.56
CHMP4CQ96CF2 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
CHMP4CQ96CF2 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
CHMP4CQ96CF2 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
CHMP4CQ96CF2 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC18.53■□□□□ 0.56
CHMP4CQ96CF2 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC18.53■□□□□ 0.56
CHMP4CQ96CF2 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CHMP4CQ96CF2 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC18.53■□□□□ 0.56
CHMP4CQ96CF2 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CHMP4CQ96CF2 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC18.53■□□□□ 0.56
CHMP4CQ96CF2 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CHMP4CQ96CF2 AC073347.1-201ENST00000421633 2643 ntBASIC18.53■□□□□ 0.56
CHMP4CQ96CF2 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CHMP4CQ96CF2 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CHMP4CQ96CF2 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CHMP4CQ96CF2 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CHMP4CQ96CF2 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CHMP4CQ96CF2 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
CHMP4CQ96CF2 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC18.52■□□□□ 0.56
CHMP4CQ96CF2 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
CHMP4CQ96CF2 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.56
CHMP4CQ96CF2 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC18.52■□□□□ 0.56
CHMP4CQ96CF2 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CHMP4CQ96CF2 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC18.52■□□□□ 0.56
CHMP4CQ96CF2 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC18.52■□□□□ 0.56
CHMP4CQ96CF2 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
CHMP4CQ96CF2 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC18.52■□□□□ 0.56
CHMP4CQ96CF2 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC18.52■□□□□ 0.56
CHMP4CQ96CF2 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CHMP4CQ96CF2 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CHMP4CQ96CF2 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
CHMP4CQ96CF2 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.56
CHMP4CQ96CF2 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC18.52■□□□□ 0.56
CHMP4CQ96CF2 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
CHMP4CQ96CF2 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CHMP4CQ96CF2 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC18.52■□□□□ 0.56
CHMP4CQ96CF2 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CHMP4CQ96CF2 AC123567.1-201ENST00000548294 1261 ntBASIC18.52■□□□□ 0.56
CHMP4CQ96CF2 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC18.52■□□□□ 0.56
CHMP4CQ96CF2 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC18.52■□□□□ 0.56
CHMP4CQ96CF2 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC18.52■□□□□ 0.56
CHMP4CQ96CF2 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC18.52■□□□□ 0.56
CHMP4CQ96CF2 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC18.52■□□□□ 0.56
CHMP4CQ96CF2 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
CHMP4CQ96CF2 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CHMP4CQ96CF2 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CHMP4CQ96CF2 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
CHMP4CQ96CF2 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC18.52■□□□□ 0.56
CHMP4CQ96CF2 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CHMP4CQ96CF2 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.55
CHMP4CQ96CF2 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC18.52■□□□□ 0.55
CHMP4CQ96CF2 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.55
CHMP4CQ96CF2 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.55
CHMP4CQ96CF2 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
CHMP4CQ96CF2 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.55
CHMP4CQ96CF2 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC18.52■□□□□ 0.55
CHMP4CQ96CF2 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
CHMP4CQ96CF2 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC18.52■□□□□ 0.55
CHMP4CQ96CF2 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.55
CHMP4CQ96CF2 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
CHMP4CQ96CF2 AC138969.3-201ENST00000546612 1459 ntBASIC18.52■□□□□ 0.55
CHMP4CQ96CF2 AC138932.2-201ENST00000548268 1459 ntBASIC18.52■□□□□ 0.55
CHMP4CQ96CF2 AC126755.4-201ENST00000549796 1459 ntBASIC18.52■□□□□ 0.55
CHMP4CQ96CF2 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CHMP4CQ96CF2 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CHMP4CQ96CF2 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
CHMP4CQ96CF2 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
CHMP4CQ96CF2 PCDH17-201ENST00000377918 8232 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CHMP4CQ96CF2 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
CHMP4CQ96CF2 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CHMP4CQ96CF2 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CHMP4CQ96CF2 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CHMP4CQ96CF2 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CHMP4CQ96CF2 DFFBP1-201ENST00000433250 979 ntBASIC18.51■□□□□ 0.55
CHMP4CQ96CF2 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC18.51■□□□□ 0.55
CHMP4CQ96CF2 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC18.51■□□□□ 0.55
CHMP4CQ96CF2 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
CHMP4CQ96CF2 AL109954.1-202ENST00000564051 2148 ntBASIC18.51■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 48.6 ms